New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 693067	98 (1.470)	6 (0.090)	4/254	8.3	6.0%	intergenic (‑94/+81)	USA300HOU_0635/USA300HOU_0636	possible replication initiation protein/hypothetical protein
	?	CP000730	= 693085	96 (1.510)					intergenic (‑112/+63)	USA300HOU_0635/USA300HOU_0636	possible replication initiation protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTACCCCCCTATTAGTAAGGGGGGTACACTGGTTTTTTAAAGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCATTCTGC  >  CP000730/692928‑693206                                                                                                                                            |                                                                                                                                            ctACCCCCCTATTAGTAAGGGGGGTACACTGGTTTTTTAAAGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCt                                                                                                                                            >  1:269769/1‑141 (MQ=255)   aCCCCCCTATTAGTAAGGGGGGTACACTGGTTTTTTAAAGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTa                                                                                                                                          >  1:526570/1‑141 (MQ=255)          ttactaataGGGGGGTACACTGGTTTTTTAAAGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACt                                                                                                                                   >  1:609092/9‑141 (MQ=255)              aGTAAGGGGGGTACACTGGTTTTTTAAAGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGt                                                                                                                               >  2:417791/1‑141 (MQ=255)               gTAAGGGGGGTACACTGGTTTTTTAAAGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTACCGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTg                                                                                                                              <  2:27777/141‑1 (MQ=255)               gTAAGGGGGGTACACTGGTTTTTTAAAGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTg                                                                                                                              >  1:230561/1‑141 (MQ=255)               gTAAGGGGGGTACACTGGTTTTTTAAAGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTg                                                                                                                              >  1:765443/1‑141 (MQ=255)                 aaGGGGGGTACACTGGTTTTTTAAAGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGGTTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCt                                                                                                                            <  2:507150/141‑1 (MQ=255)                   ggggggTACACTGGTTTTTTAAAGTCATATTTATTTATGCCTCCTATCAAATCCCAAGCGCTTTGATACATGACCGTTCTCGCTTCTTTAACGCGTATTTGTCGCACGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTg                                                                                                                          <  1:693598/141‑1 (MQ=255)                     ggggTACACTGGTTTTTTAAAGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCa                                                                                                                        <  1:272579/141‑1 (MQ=255)                      gggTACACTGGTTTTTTAAAGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCAt                                                                                                                       <  1:558296/141‑1 (MQ=255)                       ggTACACTGGTTTTTTAAAGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCAtt                                                                                                                      >  1:29457/1‑141 (MQ=255)                        gTACACTGGTTTTTTAAAGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCAttt                                                                                                                     >  1:454222/1‑141 (MQ=255)                             cTGGTTTTTTAAAGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCATATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTgcg                                                                                                                >  1:135002/1‑141 (MQ=255)                                    tttAAAGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCAt                                                                                                         <  1:605018/141‑1 (MQ=255)                                       aaaGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACg                                                                                                      >  1:602810/1‑141 (MQ=255)                                       aaaGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACg                                                                                                      >  1:542804/1‑141 (MQ=255)                                       aaaGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACg                                                                                                      >  2:687643/1‑141 (MQ=255)                                            cATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTaaa                                                                                                 >  1:397790/1‑141 (MQ=255)                                            cATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTaaa                                                                                                 >  2:378184/1‑141 (MQ=255)                                               atttatttATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCGTACGCTAAATGc                                                                                              >  1:162243/1‑141 (MQ=255)                                                tttatttaTGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCt                                                                                             <  2:54266/141‑1 (MQ=255)                                                  tatttatGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTac                                                                                           <  2:777048/141‑1 (MQ=255)                                                  tatttatGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTac                                                                                           <  2:283551/141‑1 (MQ=255)                                                    tttatGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTacac                                                                                         >  1:30232/1‑141 (MQ=255)                                                      tatGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACgg                                                                                       <  1:687643/141‑1 (MQ=255)                                                       atGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGt                                                                                      <  1:327980/141‑1 (MQ=255)                                                        tGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTc                                                                                     <  2:609092/141‑1 (MQ=255)                                                        tGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTc                                                                                     <  2:64383/141‑1 (MQ=255)                                                        tGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTc                                                                                     <  2:64435/141‑1 (MQ=255)                                                        tGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTc                                                                                     >  1:48090/1‑141 (MQ=255)                                                           ctcctATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATg                                                                                  <  2:744887/141‑1 (MQ=255)                                                            tcctATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGt                                                                                 <  1:248139/141‑1 (MQ=255)                                                                aTCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTaaa                                                                             <  1:334358/141‑1 (MQ=255)                                                                 tCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAGAt                                                                            <  1:222970/141‑1 (MQ=255)                                                                   aaaTCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCa                                                                          >  1:682536/1‑141 (MQ=255)                                                                   aaaTCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCa                                                                          <  2:269769/141‑1 (MQ=255)                                                                     aTCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACt                                                                        <  2:542804/141‑1 (MQ=255)                                                                      tCGCAAGCGATTTGATACATTTCCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTa                                                                       <  1:6148/141‑1 (MQ=255)                                                                      tCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTa                                                                       >  1:117454/1‑141 (MQ=255)                                                                        gcttgCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAAt                                                                     >  2:374421/5‑141 (MQ=255)                                                                        gcttgCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAAt                                                                     >  1:313813/5‑141 (MQ=255)                                                                        gcttgCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAAt                                                                     >  1:255107/5‑141 (MQ=255)                                                                         cAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTaaaa                                                                                                >  1:709584/1‑113 (MQ=255)                                                                         cAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTaaaa                                                                                                <  2:709584/113‑1 (MQ=255)                                                                         cAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAAtt                                                                    <  1:750285/141‑2 (MQ=255)                                                                          ttgCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATAc                                                                   <  1:374421/139‑1 (MQ=255)                                                                            gCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACta                                                                 <  1:91607/141‑1 (MQ=255)                                                                            gCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACta                                                                 >  1:433150/1‑141 (MQ=255)                                                                              gATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACtata                                                               <  2:184051/141‑1 (MQ=255)                                                                                 ttGATACATGGCCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGt                                                            <  1:666967/141‑1 (MQ=255)                                                                                 ttGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGt                                                            <  2:765443/141‑1 (MQ=255)                                                                                 ttGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGt                                                            <  2:454222/141‑1 (MQ=255)                                                                                   gATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTa                                                          >  1:741116/1‑141 (MQ=255)                                                                                    aTACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTaa                                                         >  1:529243/1‑141 (MQ=255)                                                                                      aCATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAAc                                                       <  2:230561/141‑1 (MQ=255)                                                                                           aCCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCaa                                                  <  1:22791/141‑1 (MQ=255)                                                                                           aCCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCaa                                                  <  2:749299/141‑1 (MQ=255)                                                                                            ccGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTGCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAat                                                 >  1:139745/1‑141 (MQ=255)                                                                                               ttCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATc                                              >  1:763941/1‑141 (MQ=255)                                                                                                  tcGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGcc                                           >  1:164090/1‑141 (MQ=255)                                                                                                   cGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCa                                          <  2:766330/141‑1 (MQ=255)                                                                                                    gCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTc                                                                                     <  2:508405/97‑1 (MQ=255)                                                                                                    gCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTc                                                                                     >  1:508405/1‑97 (MQ=255)                                                                                                       tttttAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGc                                                                                              >  1:33882/1‑85 (MQ=255)                                                                                                       tttttAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGc                                                                                              <  2:33882/85‑1 (MQ=255)                                                                                                        ttttAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAatat                                               <  2:628113/131‑1 (MQ=255)                                                                                                        ttttAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAatat                                               >  1:628113/1‑131 (MQ=255)                                                                                                        ttttAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAAtata                                     >  2:356903/1‑141 (MQ=255)                                                                                                            aaCGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATa                                 <  2:433150/141‑1 (MQ=255)                                                                                                            aaCGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATa                                 >  1:488551/1‑141 (MQ=255)                                                                                                             aCGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATAc                                >  1:430214/1‑141 (MQ=255)                                                                                                              cgcgTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACa                               >  1:59591/1‑141 (MQ=255)                                                                                                               gcgTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACaa                              <  1:378184/141‑1 (MQ=255)                                                                                                               gcgTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACaa                              >  1:445357/1‑141 (MQ=255)                                                                                                                cgTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAAt                             <  1:145809/141‑1 (MQ=255)                                                                                                                 gTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAat                                                 <  1:555983/120‑1 (MQ=255)                                                                                                                 gTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATc                            <  2:430214/141‑1 (MQ=255)                                                                                                                 gTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGCCATGTTAAATCACTAATACTATATGTTAAACATCAat                                                 >  2:555983/1‑120 (MQ=255)                                                                                                                      tGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCa                       <  1:500953/141‑1 (MQ=255)                                                                                                                      tGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCa                       <  1:287599/141‑1 (MQ=255)                                                                                                                        tCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGt                                                                                      >  2:439139/1‑76 (MQ=255)                                                                                                                        tCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGt                                                                                      <  1:439139/76‑1 (MQ=255)                                                                                                                        tCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACta                                                                 >  2:352741/1‑97 (MQ=255)                                                                                                                        tCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACta                                                                 <  1:352741/97‑1 (MQ=255)                                                                                                                        tCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCaaa                     <  2:313813/141‑1 (MQ=255)                                                                                                                        tCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCaaa                     >  1:787298/1‑141 (MQ=255)                                                                                                                           cAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTc                  <  2:30232/141‑1 (MQ=255)                                                                                                                                tCCGCCCCAATGCTTAACGCACTGCGTCCGTGCATGCGTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAAGACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTg             >  2:299549/1‑141 (MQ=255)                                                                                                                                   gCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAg          >  1:118197/1‑141 (MQ=255)                                                                                                                                   gCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAg          <  2:602810/141‑1 (MQ=255)                                                                                                                                    cccAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGc         >  2:292095/1‑141 (MQ=255)                                                                                                                                    cccAAATGCTTAACGCACTCCGTGCTTGCAGTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATGCTATATGGTAAACAGCAATATCGCCAATATACATACAATCCTCCAAATTCACTTGTAGc         >  2:398463/1‑141 (MQ=255)                                                                                                                                     ccAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCa        <  2:10797/141‑1 (MQ=255)                                                                                                                                       aaaTGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCAtt      >  1:79586/1‑141 (MQ=255)                                                                                                                                       aaaTGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCAtt      >  1:284316/1‑141 (MQ=255)                                                                                                                                           gCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCATTCTGc  >  2:554292/1‑141 (MQ=255)                                                                                                                                           gCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCATTCTGc  >  2:91345/1‑141 (MQ=255)                                                                                                                                            |                                                                                                                                            CTACCCCCCTATTAGTAAGGGGGGTACACTGGTTTTTTAAAGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCATTCTGC  >  CP000730/692928‑693206

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.