New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 69306798 (1.470)6 (0.090) 4/254 8.3 6.0% intergenic (‑94/+81) USA300HOU_0635/USA300HOU_0636 possible replication initiation protein/hypothetical protein
?CP000730 = 693085 96 (1.510)intergenic (‑112/+63) USA300HOU_0635/USA300HOU_0636 possible replication initiation protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 101 total aligned reads displayed.

GGGGGGTACACTGGTTTTTTAAAGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCATTCTGCCATGTCCTGCTTCACTCAA  >  CP000730/692946‑693225
                                                                                                                                           |                                                                                                                                            
ggggggTACACTGGTTTTTTAAAGTCATATTTATTTATGCCTCCTATCAAATCCCAAGCGCTTTGATACATGACCGTTCTCGCTTCTTTAACGCGTATTTGTCGCACGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTg                                                                                                                                             <  1:693598/141‑1 (MQ=255)
  ggggTACACTGGTTTTTTAAAGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCa                                                                                                                                           <  1:272579/141‑1 (MQ=255)
   gggTACACTGGTTTTTTAAAGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCAt                                                                                                                                          <  1:558296/141‑1 (MQ=255)
    ggTACACTGGTTTTTTAAAGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCAtt                                                                                                                                         >  1:29457/1‑141 (MQ=255)
     gTACACTGGTTTTTTAAAGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCAttt                                                                                                                                        >  1:454222/1‑141 (MQ=255)
          cTGGTTTTTTAAAGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCATATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTgcg                                                                                                                                   >  1:135002/1‑141 (MQ=255)
                 tttAAAGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCAt                                                                                                                            <  1:605018/141‑1 (MQ=255)
                    aaaGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACg                                                                                                                         >  1:602810/1‑141 (MQ=255)
                    aaaGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACg                                                                                                                         >  1:542804/1‑141 (MQ=255)
                    aaaGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACg                                                                                                                         >  2:687643/1‑141 (MQ=255)
                         cATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTaaa                                                                                                                    >  1:397790/1‑141 (MQ=255)
                         cATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTaaa                                                                                                                    >  2:378184/1‑141 (MQ=255)
                            atttatttATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCGTACGCTAAATGc                                                                                                                 >  1:162243/1‑141 (MQ=255)
                             tttatttaTGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCt                                                                                                                <  2:54266/141‑1 (MQ=255)
                               tatttatGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTac                                                                                                              <  2:283551/141‑1 (MQ=255)
                               tatttatGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTac                                                                                                              <  2:777048/141‑1 (MQ=255)
                                 tttatGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTacac                                                                                                            >  1:30232/1‑141 (MQ=255)
                                   tatGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACgg                                                                                                          <  1:687643/141‑1 (MQ=255)
                                    atGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGt                                                                                                         <  1:327980/141‑1 (MQ=255)
                                     tGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTc                                                                                                        <  2:609092/141‑1 (MQ=255)
                                     tGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTc                                                                                                        >  1:48090/1‑141 (MQ=255)
                                     tGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTc                                                                                                        <  2:64435/141‑1 (MQ=255)
                                     tGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTc                                                                                                        <  2:64383/141‑1 (MQ=255)
                                        ctcctATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATg                                                                                                     <  2:744887/141‑1 (MQ=255)
                                         tcctATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGt                                                                                                    <  1:248139/141‑1 (MQ=255)
                                             aTCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTaaa                                                                                                <  1:334358/141‑1 (MQ=255)
                                              tCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAGAt                                                                                               <  1:222970/141‑1 (MQ=255)
                                                aaaTCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCa                                                                                             >  1:682536/1‑141 (MQ=255)
                                                aaaTCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCa                                                                                             <  2:269769/141‑1 (MQ=255)
                                                  aTCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACt                                                                                           <  2:542804/141‑1 (MQ=255)
                                                   tCGCAAGCGATTTGATACATTTCCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTa                                                                                          <  1:6148/141‑1 (MQ=255)
                                                   tCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTa                                                                                          >  1:117454/1‑141 (MQ=255)
                                                     gcttgCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAAt                                                                                        >  2:374421/5‑141 (MQ=255)
                                                     gcttgCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAAt                                                                                        >  1:313813/5‑141 (MQ=255)
                                                     gcttgCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAAt                                                                                        >  1:255107/5‑141 (MQ=255)
                                                      cAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTaaaa                                                                                                                   >  1:709584/1‑113 (MQ=255)
                                                      cAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTaaaa                                                                                                                   <  2:709584/113‑1 (MQ=255)
                                                      cAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAAtt                                                                                       <  1:750285/141‑2 (MQ=255)
                                                       ttgCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATAc                                                                                      <  1:374421/139‑1 (MQ=255)
                                                         gCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACta                                                                                    >  1:433150/1‑141 (MQ=255)
                                                         gCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACta                                                                                    <  1:91607/141‑1 (MQ=255)
                                                           gATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACtata                                                                                  <  2:184051/141‑1 (MQ=255)
                                                              ttGATACATGGCCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGt                                                                               <  1:666967/141‑1 (MQ=255)
                                                              ttGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGt                                                                               <  2:454222/141‑1 (MQ=255)
                                                              ttGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGt                                                                               <  2:765443/141‑1 (MQ=255)
                                                                gATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTa                                                                             >  1:741116/1‑141 (MQ=255)
                                                                 aTACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTaa                                                                            >  1:529243/1‑141 (MQ=255)
                                                                   aCATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAAc                                                                          <  2:230561/141‑1 (MQ=255)
                                                                        aCCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCaa                                                                     <  1:22791/141‑1 (MQ=255)
                                                                        aCCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCaa                                                                     <  2:749299/141‑1 (MQ=255)
                                                                         ccGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTGCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAat                                                                    >  1:139745/1‑141 (MQ=255)
                                                                            ttCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATc                                                                 >  1:763941/1‑141 (MQ=255)
                                                                               tcGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGcc                                                              >  1:164090/1‑141 (MQ=255)
                                                                                cGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCa                                                             <  2:766330/141‑1 (MQ=255)
                                                                                 gCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTc                                                                                                        >  1:508405/1‑97 (MQ=255)
                                                                                 gCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTc                                                                                                        <  2:508405/97‑1 (MQ=255)
                                                                                    tttttAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGc                                                                                                                 >  1:33882/1‑85 (MQ=255)
                                                                                    tttttAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGc                                                                                                                 <  2:33882/85‑1 (MQ=255)
                                                                                     ttttAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAatat                                                                  <  2:628113/131‑1 (MQ=255)
                                                                                     ttttAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAatat                                                                  >  1:628113/1‑131 (MQ=255)
                                                                                     ttttAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAAtata                                                        >  2:356903/1‑141 (MQ=255)
                                                                                         aaCGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATa                                                    <  2:433150/141‑1 (MQ=255)
                                                                                         aaCGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATa                                                    >  1:488551/1‑141 (MQ=255)
                                                                                          aCGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATAc                                                   >  1:430214/1‑141 (MQ=255)
                                                                                           cgcgTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACa                                                  >  1:59591/1‑141 (MQ=255)
                                                                                            gcgTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACaa                                                 <  1:378184/141‑1 (MQ=255)
                                                                                            gcgTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACaa                                                 >  1:445357/1‑141 (MQ=255)
                                                                                             cgTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAAt                                                <  1:145809/141‑1 (MQ=255)
                                                                                              gTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAat                                                                    <  1:555983/120‑1 (MQ=255)
                                                                                              gTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATc                                               <  2:430214/141‑1 (MQ=255)
                                                                                              gTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGCCATGTTAAATCACTAATACTATATGTTAAACATCAat                                                                    >  2:555983/1‑120 (MQ=255)
                                                                                                   tGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCa                                          <  1:500953/141‑1 (MQ=255)
                                                                                                   tGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCa                                          <  1:287599/141‑1 (MQ=255)
                                                                                                     tCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGt                                                                                                         >  2:439139/1‑76 (MQ=255)
                                                                                                     tCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGt                                                                                                         <  1:439139/76‑1 (MQ=255)
                                                                                                     tCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACta                                                                                    >  2:352741/1‑97 (MQ=255)
                                                                                                     tCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACta                                                                                    <  1:352741/97‑1 (MQ=255)
                                                                                                     tCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCaaa                                        >  1:787298/1‑141 (MQ=255)
                                                                                                     tCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCaaa                                        <  2:313813/141‑1 (MQ=255)
                                                                                                        cAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTc                                     <  2:30232/141‑1 (MQ=255)
                                                                                                             tCCGCCCCAATGCTTAACGCACTGCGTCCGTGCATGCGTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAAGACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTg                                >  2:299549/1‑141 (MQ=255)
                                                                                                                gCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAg                             <  2:602810/141‑1 (MQ=255)
                                                                                                                gCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAg                             >  1:118197/1‑141 (MQ=255)
                                                                                                                 cccAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGc                            >  2:292095/1‑141 (MQ=255)
                                                                                                                 cccAAATGCTTAACGCACTCCGTGCTTGCAGTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATGCTATATGGTAAACAGCAATATCGCCAATATACATACAATCCTCCAAATTCACTTGTAGc                            >  2:398463/1‑141 (MQ=255)
                                                                                                                  ccAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCa                           <  2:10797/141‑1 (MQ=255)
                                                                                                                    aaaTGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCAtt                         >  1:284316/1‑141 (MQ=255)
                                                                                                                    aaaTGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCAtt                         >  1:79586/1‑141 (MQ=255)
                                                                                                                        gCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCATTCTGc                     >  2:554292/1‑141 (MQ=255)
                                                                                                                             aCGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCATTCTGCCATGt                <  2:397790/141‑1 (MQ=255)
                                                                                                                                cACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTCAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCATTCTGCCATGTCCt             <  2:211591/141‑1 (MQ=255)
                                                                                                                                  cTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCATTCTGCCATGTCCTGc           >  2:312881/1‑141 (MQ=255)
                                                                                                                                  cTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCATTCTGCCATGTCCTGc           <  2:48090/141‑1 (MQ=255)
                                                                                                                                   tCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCATTCTGCCATGTCCt             >  1:702397/1‑138 (MQ=255)
                                                                                                                                   tCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCATTCTGCCATGTCCt             <  2:702397/138‑1 (MQ=255)
                                                                                                                                      gTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCATTCTGCCATGTACTGCTTCa       >  2:625676/1‑141 (MQ=255)
                                                                                                                                         cTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAAt                                       <  1:787482/106‑1 (MQ=255)
                                                                                                                                         cTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAAt                                       >  2:787482/1‑106 (MQ=255)
                                                                                                                                          ttGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCATTCTGCCATGTCCTGCTTCACTCa   <  2:135002/141‑1 (MQ=255)
                                                                                                                                           tGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCATTCTGCCATGTCCTGCTTCACTCaa  <  2:117454/141‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                            
GGGGGGTACACTGGTTTTTTAAAGTCATATTTATTTATGCCTCCTATCAAATCGCAAGCGATTTGATACATGACCGTTCTCGCTTTTTTAACGCGTATTTGTCGCAGGCTCCGCCCAAATGCTTAACGCACTCCGTGCTTGCATTTCTGCGCCTGCATACGCTAAAAGCTACACGGTCATGTTAAATCACTAATACTATATGTTAAACATCAATATCGCCAATATAAATACAATCTTCCAAATTCACTTGTAGCATTCTGCCATGTCCTGCTTCACTCAA  >  CP000730/692946‑693225

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.