New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1873423	53 (0.800)	4 (0.070)	3/240	8.6	8.4%	intergenic (‑99/+651)	USA300HOU_1742/USA300HOU_1743	M20 family peptidase/hypothetical protein
	?	CP000730	= 1873461	40 (0.670)					intergenic (‑137/+613)	USA300HOU_1742/USA300HOU_1743	M20 family peptidase/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GATTTGATCTTCGTATTGTTGAACTTTTTCTTTCCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATT  >  CP000730/1873286‑1873560                                                                                                                                          |                                                                                                                                          gATTTGATCTTCGTATTGTTGAACTTTTTCTTTCCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACg                                                                                                                                        >  2:272973/1‑141 (MQ=255)      gATCTTCGTATTGTTGAACTTTTTCTTTCCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCt                                                                                                                                   <  1:243116/141‑1 (MQ=255)          ttCGTATTGTTGAACTTTCTCTTTCCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTg                                                                                                                               <  1:392863/141‑1 (MQ=255)                 tgttgAACTTTTTCTTTCCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGac                                                                                                                        <  1:692255/141‑1 (MQ=255)                  gttgAACTTTTTCTTTCCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGAt                                                                                                                                      <  1:449490/126‑1 (MQ=255)                  gttgAACTTTTTCTTTCCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGAt                                                                                                                                      >  2:449490/1‑126 (MQ=255)                   ttgAACTTTTTCTTTCCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGacac                                                                                                                      >  2:297373/1‑141 (MQ=255)                    tgAACTTTTTCTTTCCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGAcaca                                                                                                                     <  1:133913/141‑1 (MQ=255)                      aaCTTTTTCTTTCCACCTTCGAAATCGACTTCCTTTTTTCTAT‑ATTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAAt                                                                                                                  <  1:361890/141‑1 (MQ=255)                       aCTTTTTCTTTCCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACaaaa                                                                                                                  >  2:61655/1‑140 (MQ=255)                        cTTTTTCTTTCCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATc                                                                                                                 <  2:20450/141‑1 (MQ=255)                           tttctttcCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATa                                                                                                              <  2:565077/141‑1 (MQ=255)                               tttcCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATa                                                                                                          <  2:612845/141‑1 (MQ=255)                                ttcCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAg                                                                                                         >  1:781239/1‑141 (MQ=255)                                  ccACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAgct                                                                                                       <  2:314013/141‑1 (MQ=255)                                  ccACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAgct                                                                                                       <  1:173319/141‑1 (MQ=255)                                       ttCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCttt                                                                                                  <  1:125331/141‑1 (MQ=255)                                           caaTCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGTCACAATTCATAAATAGCTGCTTTGTTc                                                                                              <  2:78463/140‑1 (MQ=255)                                            aaTCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTcc                                                                                             >  2:742782/1‑141 (MQ=255)                                                gACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCtttt                                                                                         <  1:526452/141‑1 (MQ=255)                                                 aCTTCCTTTTTTTTTTATTTTTAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCttttt                                                                                        >  2:602694/1‑141 (MQ=255)                                                 aCTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCttttt                                                                                        >  1:326535/1‑141 (MQ=255)                                                    tCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTaa                                                                                     <  2:428661/141‑1 (MQ=255)                                                                       aaTTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATaca                                                                  >  1:25684/1‑141 (MQ=255)                                                                       aaTTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATaca                                                                  >  1:184087/1‑141 (MQ=255)                                                                             aTTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACg                                                                                                                                        <  1:86242/65‑1 (MQ=255)                                                                             aTTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACg                                                                                                                                        >  2:86242/1‑65 (MQ=255)                                                                               tttACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCa                                                          <  2:155129/141‑1 (MQ=255)                                                                                        aaaGATATAAGAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATGAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCga                                                 <  2:758788/141‑1 (MQ=255)                                                                                           gATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCgagag                                              >  1:354471/1‑140 (MQ=255)                                                                                            atatAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGata                                             <  1:739953/141‑1 (MQ=255)                                                                                            atatAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGata                                             <  1:739952/141‑1 (MQ=255)                                                                                             tataAAAACTACAATAAGATGTCAGAAAATAATACAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCCCGAGatat                                            >  2:139312/1‑141 (MQ=255)                                                                                             tataAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGatat                                            >  2:310863/1‑141 (MQ=255)                                                                                               taAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTGTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATaa                                          >  2:367006/1‑141 (MQ=255)                                                                                                 aaaaCTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGt                                        >  1:404975/1‑141 (MQ=255)                                                                                                  aaaCTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTc                                       <  1:297373/141‑1 (MQ=255)                                                                                                    aCTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCaa                                     <  1:584718/141‑1 (MQ=255)                                                                                                            aaGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAg                             <  2:781239/141‑1 (MQ=255)                                                                                                              gATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGc                           <  1:729663/141‑1 (MQ=255)                                                                                                                 gTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGcaca                        <  1:272973/141‑1 (MQ=255)                                                                                                                  tCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGcacac                       >  1:452674/1‑141 (MQ=255)                                                                                                                    aGAAAATAATACAAAGGAACAAAACGATGCTATTGATATCACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACaa                     <  2:244373/141‑1 (MQ=255)                                                                                                                      aaaaTAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAAtt                   <  1:299642/141‑1 (MQ=255)                                                                                                                         ataataAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTaa                <  2:598284/141‑1 (MQ=255)                                                                                                                                aaaGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGAc         <  2:368454/141‑1 (MQ=255)                                                                                                                                 aaGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACa        <  2:613764/141‑1 (MQ=255)                                                                                                                                  aGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAg       <  2:719461/141‑1 (MQ=255)                                                                                                                                  aGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAg       <  1:517364/141‑1 (MQ=255)                                                                                                                                      aCAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAAt   >  2:781706/1‑141 (MQ=255)                                                                                                                                       cAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATaca                                                                  >  2:184631/1‑77 (MQ=255)                                                                                                                                       cAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATaca                                                                  <  1:184631/77‑1 (MQ=255)                                                                                                                                       cAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAAtt  >  1:777705/1‑141 (MQ=255)                                                                                                                                          |                                                                                                                                          GATTTGATCTTCGTATTGTTGAACTTTTTCTTTCCACATTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATT  >  CP000730/1873286‑1873560

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.