New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1873423	53 (0.800)	4 (0.070)	3/240	8.6	8.4%	intergenic (‑99/+651)	USA300HOU_1742/USA300HOU_1743	M20 family peptidase/hypothetical protein
	?	CP000730	= 1873461	40 (0.670)					intergenic (‑137/+613)	USA300HOU_1742/USA300HOU_1743	M20 family peptidase/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAA  >  CP000730/1873324‑1873600                                                                                                                                          |                                                                                                                                            ttCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCttt                                                                                                                                          <  1:125331/141‑1 (MQ=255)     caaTCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGTCACAATTCATAAATAGCTGCTTTGTTc                                                                                                                                      <  2:78463/140‑1 (MQ=255)      aaTCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTcc                                                                                                                                     >  2:742782/1‑141 (MQ=255)          gACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCtttt                                                                                                                                 <  1:526452/141‑1 (MQ=255)           aCTTCCTTTTTTTTTTATTTTTAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCttttt                                                                                                                                >  2:602694/1‑141 (MQ=255)           aCTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCttttt                                                                                                                                >  1:326535/1‑141 (MQ=255)              tCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTaa                                                                                                                             <  2:428661/141‑1 (MQ=255)                                 aaTTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATaca                                                                                                          >  1:25684/1‑141 (MQ=255)                                 aaTTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATaca                                                                                                          >  1:184087/1‑141 (MQ=255)                                         tttACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCa                                                                                                  <  2:155129/141‑1 (MQ=255)                                                  aaaGATATAAGAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATGAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCga                                                                                         <  2:758788/141‑1 (MQ=255)                                                     gATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCgagag                                                                                      >  1:354471/1‑140 (MQ=255)                                                      atatAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGata                                                                                     <  1:739952/141‑1 (MQ=255)                                                      atatAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGata                                                                                     <  1:739953/141‑1 (MQ=255)                                                       tataAAAACTACAATAAGATGTCAGAAAATAATACAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCCCGAGatat                                                                                    >  2:139312/1‑141 (MQ=255)                                                       tataAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGatat                                                                                    >  2:310863/1‑141 (MQ=255)                                                         taAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTGTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATaa                                                                                  >  2:367006/1‑141 (MQ=255)                                                           aaaaCTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGt                                                                                >  1:404975/1‑141 (MQ=255)                                                            aaaCTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTc                                                                               <  1:297373/141‑1 (MQ=255)                                                              aCTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCaa                                                                             <  1:584718/141‑1 (MQ=255)                                                                      aaGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAg                                                                     <  2:781239/141‑1 (MQ=255)                                                                        gATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGc                                                                   <  1:729663/141‑1 (MQ=255)                                                                           gTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGcaca                                                                <  1:272973/141‑1 (MQ=255)                                                                            tCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGcacac                                                               >  1:452674/1‑141 (MQ=255)                                                                              aGAAAATAATACAAAGGAACAAAACGATGCTATTGATATCACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACaa                                                             <  2:244373/141‑1 (MQ=255)                                                                                aaaaTAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAAtt                                                           <  1:299642/141‑1 (MQ=255)                                                                                   ataataAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTaa                                                        <  2:598284/141‑1 (MQ=255)                                                                                          aaaGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGAc                                                 <  2:368454/141‑1 (MQ=255)                                                                                           aaGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACa                                                <  2:613764/141‑1 (MQ=255)                                                                                            aGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAg                                               <  1:517364/141‑1 (MQ=255)                                                                                            aGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAg                                               <  2:719461/141‑1 (MQ=255)                                                                                                aCAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAAt                                           >  2:781706/1‑141 (MQ=255)                                                                                                 cAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATaca                                                                                                          >  2:184631/1‑77 (MQ=255)                                                                                                 cAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATaca                                                                                                          <  1:184631/77‑1 (MQ=255)                                                                                                 cAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAAtt                                          >  1:777705/1‑141 (MQ=255)                                                                                                         tGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACcgaac                                  >  1:490497/1‑141 (MQ=255)                                                                                                           cTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCaa                                                                                                 >  2:771677/1‑76 (MQ=255)                                                                                                           cTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCaa                                                                                                 <  1:771677/76‑1 (MQ=255)                                                                                                             aTTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGaaa                              >  2:527756/1‑141 (MQ=255)                                                                                                                  tatGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATgcg                         <  2:326535/141‑1 (MQ=255)                                                                                                                   atGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATgcgc                        <  1:602694/141‑1 (MQ=255)                                                                                                                    tGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGcc                       <  1:117442/141‑1 (MQ=255)                                                                                                                        acaAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCgg                   <  1:557891/141‑1 (MQ=255)                                                                                                                           aaTCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTAAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGc                <  1:303325/141‑1 (MQ=255)                                                                                                                                 aaaTAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATTCACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAAc          >  2:623108/1‑141 (MQ=255)                                                                                                                                         gctTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGaa  >  2:643220/1‑141 (MQ=255)                                                                                                                                          |                                                                                                                                            TTCGAAATCGACTTCCTTTTTTCTATAAGTTAAATTCTATTTTACATGAAAAGATATAAAAACTACAATAAGATGTCAGAAAATAATAAAAAGGAACAAAACGATGCTATTGATATGACACAAATCATAAATAGCTGCTTTGTTCCTTTTTTAATTTATATATTTAAAATACACATATTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAA  >  CP000730/1873324‑1873600

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.