| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 900736 = | 24 (0.830) | 3 (0.110) | 3/248 | 3.8 | 10.8% | coding (108/384 nt) | USA300HOU_0859 | hypothetical protein |
| ? | CP000730 | 900761 = | 27 (0.990) | coding (133/384 nt) | USA300HOU_0859 | hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGTGTTGTGTTTCTTTCATGACATCACTTAGCGTCATTGTTACTTCATCAAGAATTAAAAATGCTTCATCTTCAAAATCTAATTCAGCAAGAATATTGAACAATCCATTATGAACTAACTTTAAAGCATATTCATATAATGCTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/900881‑900736‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgctttaAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAACAATGACGCTAAGTGATGTCATGAAAGAAACACAACACGTTTACCGTTATAGTGTCA > CP000730/900761‑900899 CGTGTTGTGTTTCTTTCATGACATCACTTAGCGTCATTGTTACTTCATCAAGAATTAAAAATGCTTCATCTTCAAAATCTAATTCAGCAAGAATATTGAACAATCCATTATGAACTAACTTTAAAGCATATTCATATAATG > 1:286356/1‑141 GTTGTGTTTCTTTCATGACATCACTTAGCGTCATTGTTACTTCATCAAGAATTAAAAATGCTTCATCTTCAAAATCTAATTCAGCAAGAATATTGAACAATCCATTATGAACTAACTTTAAAGCATATTCATATAATGCTT > 1:251050/1‑141 GTTGTGTTTCTTTCATGACATCACTTAGCGTCATTGTTACTTCATCAAGAATTAAAAATGCTTCATCTTCAAAATCTAATTCAGCAAGAATATTGAACAATCCATTATGAACTAACTTTAAAGCATATTCATATAA < 2:344979/136‑1 GTTGTGTTTCTTTCATGACATCACTTAGCGTCATTGTTACTTCATCAAGAATTAAAAATGCTTCATCTTCAAAATCTAATTCAGCAAGAATATTGAACAATCCATTATGAACTAACTTTAAAGCATATTCATATAA > 1:344979/1‑136 TCCATTATGAACTAACTTTAAAGCATATTCATATAATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAACAATGACGCTAAGTGA > 2:42844/1‑141 AACTTTAAAGCATATTCATATAATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATG < 2:290217/106‑1 AACTTTAAAGCATATTCATATAATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATG > 1:290217/1‑106 ATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAACAATGACGCTAAGTGATGTCATGAAAGAAACACAACACGTTTACCGTTATA > 2:342782/1‑141 TAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAACAATGACGCTAAGTGATGTCATGAAAGAAACACAACACGTTTACCGTTATAGTGTCA > 1:54381/1‑141 CGTGTTGTGTTTCTTTCATGACATCACTTAGCGTCATTGTTACTTCATCAAGAATTAAAAATGCTTCATCTTCAAAATCTAATTCAGCAAGAATATTGAACAATCCATTATGAACTAACTTTAAAGCATATTCATATAATGCTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/900881‑900736‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgctttaAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAACAATGACGCTAAGTGATGTCATGAAAGAAACACAACACGTTTACCGTTATAGTGTCA > CP000730/900761‑900899 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |