New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	900736 =	24 (0.830)	3 (0.110)	3/248	3.8	10.8%	coding (108/384 nt)	USA300HOU_0859	hypothetical protein
	?	CP000730	900761 =	27 (0.990)					coding (133/384 nt)	USA300HOU_0859	hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAAGTAGGTAGTTAAGATGGAAATCAAACAAAAATATCAATTATCAAAAGTGGTTAAAATATTAGAAGTAGTATTATACGAGGAAGATAAGTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAACAATGACGCTAAGTGATGTCATGAAAGAAACAC  >  CP000730/900613‑900875                                                                                                                            |                                                                                                                                            aaaGTAGGTAGTTAAGATGGAAATCAAACAAAAATATCAATTATCAAAAGTGGTTAAAATATTAGAAGTAGTATTATACGAGGAAGATAAGTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCAtattcatataa                                                                                                                            <  2:204261/141‑11 (MQ=255)      aggtagTTAAGATGGAAATCAAACAAAAATATCAATTATCAAAAGTGGTTAAAATATTAGAAGTAGTATTATACGAGGAAGATAAGTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCtt                                                                                                                       >  2:104690/1‑141 (MQ=255)       ggtagTTAAGATGGAAATCAAACAAAAATATCAATTATCAAAAGTGGTTAAAATATTAGAAGTAGTATTATACGAGGAAGATAAGTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCttt                                                                                                                      >  2:347726/1‑141 (MQ=255)         tagTTAAGATGGAAATCAAACAAAAATATCAATTATCAAAAGTGGTTAAAATATTAGAAGTAGTATTATACGAGGAAGATAAGTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTaa                                                                                                                    >  2:238582/1‑141 (MQ=255)                 aTGGAAATCAAACAAAAATATCAATTATCAAAAGTGGTTAAAATATTAGAAGTAGTATTATACGAGGAAGATAAGTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAagttagtt                                                                                                            >  1:35663/1‑141 (MQ=255)                      aaTCAAACAAAAATATCAATTATCAAAAGGGGTTAAAATATTAGAAGTAGTATTATACGAGGAAGCCACGTTTCAATCAGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATaa                                                                                                       <  2:331380/141‑1 (MQ=255)                                                aaGTGGTTAAAATATTAGAAGTAGTATTATACGAGGAAGATAAGTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAAt                                                                             <  1:15322/141‑1 (MQ=255)                                                aaGTGGTTAAAATATTAGAAGTAGTATTATACGAGGAAGATAAGTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAAt                                                                             >  1:269934/1‑141 (MQ=255)                                                      ttAAAATATTAGAAGTAGTATTATACGAGGAAGATAAGTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGAtt                                                                       <  1:301808/141‑1 (MQ=255)                                                              ttaaacgaagtaTTATACGCGGAAGGTAAGTTTCAATCCGATAAGGACTATCATTACGAGGATAAAGCATTAGATGAATATGCTCTAAGGCTAGTTCATAAAGGATTGTTCAATATTCTTGCGGAGTTCGATTTTGAAGAt                                                               >  2:297556/9‑141 (MQ=255)                                                              ttAGAAGTAGTATTATACGAGGAAGATAAGTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGAt                                                               >  1:325308/1‑141 (MQ=255)                                                                aGAAGTAGTATTATACGAGGAAGATAAGTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGa                                                             >  1:195401/1‑141 (MQ=255)                                                                    gtagtaTTATACGAGGAAGATAAGTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCa                                                         <  1:182666/141‑1 (MQ=255)                                                                        tattatACGAGGAAGATAAGTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCAtttt                                                     <  2:228365/141‑1 (MQ=255)                                                                                 aGGAAGATAAGTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTtg                                            <  1:139057/141‑1 (MQ=255)                                                                                           gTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAAc                                  >  2:75702/1‑141 (MQ=255)                                                                                             ttCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAACaa                                >  1:261413/1‑141 (MQ=255)                                                                                                         aGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAGGATGAAGCATTTTTAATTCTTGATGAAGTAACAATGACGCTAAGTg                    <  2:269934/141‑1 (MQ=255)                                                                                                           gACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAACAATGACGCTAAGTGAt                  >  2:245439/1‑141 (MQ=255)                                                                                                               aTCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAACAATGACGCTAAGTGATGTCa              <  2:259188/141‑1 (MQ=255)                                                                                                                    tATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCAtttt                                                     >  1:140720/1‑97 (MQ=255)                                                                                                                    tATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCAtttt                                                     <  2:140720/97‑1 (MQ=255)                                                                                                                          gATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAACAATGACGCTAAGTGATGTCATGAAAGAaaca   <  1:238582/141‑1 (MQ=255)                                                                                                                           aTAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAACAATGACGCTAAGTGATGTCATGAAAGAaacac  >  1:191769/1‑141 (MQ=255)                                                                                                                            |                                                                                                                                            AAAGTAGGTAGTTAAGATGGAAATCAAACAAAAATATCAATTATCAAAAGTGGTTAAAATATTAGAAGTAGTATTATACGAGGAAGATAAGTTTCAATCCGATAAGGACTATCATTATCAGGATAAAGCATTATATGAATATGCTTTAAAGTTAGTTCATAATGGATTGTTCAATATTCTTGCTGAATTAGATTTTGAAGATGAAGCATTTTTAATTCTTGATGAAGTAACAATGACGCTAAGTGATGTCATGAAAGAAACAC  >  CP000730/900613‑900875

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.