| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | CP000730 | 1,747,382 | (TAC)3→2 | 100% | coding (2065‑2067/2280 nt) | secDF ← | RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP000730 | 1747374 | 1747376 | 3 | 37 [0] | [1] 38 | secDF | RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1747377 = | 0 (0.000) | 37 (0.860) | 30/242 | NT | 100% | coding (2072/2280 nt) | secDF | RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter |
| ? | CP000730 | = 1747373 | 0 (0.000) | coding (2076/2280 nt) | secDF | RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter | |||||
TTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAACTACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCTTTTGTAAGTTTTCACGTACACGGTCAAAC > CP000730/1747252‑1747514 | gttttttcattattccccatagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACt < 1:531710‑M1/15‑1 (MQ=255) tttttttattattttccatagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaatactgctaaagtaaagttgaatatcgtaggagcctcgaagaatagtatagcaCCTACTACCATAACTg < 2:190232‑M1/16‑1 (MQ=255) tttttcattattccccatagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggatcaccgaagaatagtatagcaACTACTACAATAACTGt > 2:94164‑M1/124‑140 (MQ=255) ttttcatttttccccatagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGtt > 2:439595‑M1/123‑140 (MQ=255) ttcatttttccccttagttgaacgacaatgaagattgaatatattacacaagaaataaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTaa > 1:56190‑M1/121‑140 (MQ=255) ttattattccccatagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAAt > 2:296075‑M1/120‑140 (MQ=255) tccttattccccatagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAAt > 2:458067‑M1/120‑140 (MQ=255) tcattattccccatagcggaacggcaatgaagattgaagagaatgcaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtaaagcaACTACTACAATAACTGTCAAt < 2:294701‑M1/21‑1 (MQ=255) cattattccccatagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATa < 2:157407‑M1/22‑1 (MQ=255) attcttccccagagctgaacggcaatgaagatttaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtagaagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATAc > 2:446656‑M1/118‑140 (MQ=255) ttattccccatagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACt < 1:236198‑M1/24‑1 (MQ=255) ttccccatagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTa > 2:158501‑M1/114‑140 (MQ=255) tagcggaacggcaatgaagattgaagagaatacaccagagatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTg > 2:280459‑M1/107‑140 (MQ=255) ggaacggcaatgaagattgcaatgactgctccaaaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACg < 1:404809‑M1/38‑1 (MQ=255) ggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACg < 1:518785‑M1/38‑1 (MQ=255) tgcaatgaagatttaagagaataaactagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCa > 1:324794‑M1/98‑140 (MQ=255) ggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCa > 2:455652‑M1/98‑140 (MQ=255) gcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTAGTAATTGAACGGGTCAt < 2:295007‑M1/44‑1 (MQ=255) agagaatacaccagaaatcaatccggtaaataatgctaaagtaaagttgaatatcgtaggagcaccaaagaatagtatagaaACTACTACAATAACTATTAATACTGTATTAATTGAACGTTTCATTGTCTGTCAAATTg < 1:421792‑M1/58‑1 (MQ=255) tacaccagaaatcaatcagataaataatgctaaaataaagtaaaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTAt > 1:101276‑M1/77‑140 (MQ=255) acaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTATAATTGATCTAtt < 2:343074‑M1/65‑1 (MQ=255) acaaaagaaatcaatccgataaataatgctaaagtaaagtcgaatctcgtaggagcaccgcagaatagtatagcaACTACTCCAATAACTGTTAATACTGTATTAATTAAAGGTGTAATGGGCTGTATACTTGATCTAtt < 2:509504‑M1/65‑1 (MQ=255) caccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTa < 1:171456‑M1/66‑1 (MQ=255) aaatcaatccgataaataatgctaaagtaaagtggaatatcgtaggggcacggaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGAaatattagcgtaa < 2:179080‑M1/72‑7 (MQ=255) atccgataaaaaatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATACCTGTTAACATTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATAtcatca > 2:153214‑M1/63‑140 (MQ=255) tgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCtgttg < 1:431287‑M1/91‑1 (MQ=255) gctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCtgttgt > 2:236198‑M1/49‑140 (MQ=255) aggaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTaa > 1:374786‑M1/44‑140 (MQ=255) aagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCACTTTGTTCTGTTTTCGTAATCAc < 2:205024‑M1/101‑1 (MQ=255) aagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATAATCAATTTGTTCTGTTGTCGTAATCAc < 2:530633‑M1/101‑1 (MQ=255) aagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTACAATTGATCGATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCAc > 2:2773‑M1/40‑140 (MQ=255) atttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTACCGCTATCATCAATTTGTTGTGTGGGCGTAATCACt > 2:335108‑M1/39‑140 (MQ=255) atttgaatatcgaaggtgaacctatgtatgttatggcaACTACTACAATATCTGTTAATACTGTATTAATTGAATGTGTCATTGTCTGTCTAATTGATCTATTAACTATATCATCAATTTGTTCTGTTGTCGTAATCACt > 2:131880‑M1/39‑140 (MQ=255) aatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCACATTGGCTTGTTATTGTAATCACCttacc < 1:99146‑M1/107‑3 (MQ=255) atcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCtt > 2:536129‑M1/31‑140 (MQ=255) atcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCtt > 2:293677‑M1/31‑140 (MQ=255) tcgtaggtgcaccgaagaataggatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACCATAGCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCttt > 2:2742‑M1/30‑140 (MQ=255) atacaactacAAGAACTGTTAAAACTGTATTAATTGAACTAGTCATTGTCTGTCTATTTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCTTTTGTAAGTTTTCACGTACACGGTCaaat < 2:423198/139‑2 (MQ=255) | TTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAACTACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCTTTTGTAAGTTTTCACGTACACGGTCAAAC > CP000730/1747252‑1747514 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |