Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC CP000730 1,747,382 (TAC)3→2 100% coding (2065‑2067/2280 nt) secDF ← RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP000730 1747374 1747376 3 37 [0] [1] 38 secDF RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 1747377 =0 (0.000)37 (0.860) 30/242 NT 100% coding (2072/2280 nt) secDF RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter
?CP000730 = 1747373 0 (0.000)coding (2076/2280 nt) secDF RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter

TTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAACTACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCTTTTGTAAGTTTTCACGTACACGGTCAAAC  >  CP000730/1747252‑1747514
                                                                                                                             |                                                                                                                                         
gttttttcattattccccatagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACt                                                                                                                             <  1:531710‑M1/15‑1 (MQ=255)
 tttttttattattttccatagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaatactgctaaagtaaagttgaatatcgtaggagcctcgaagaatagtatagcaCCTACTACCATAACTg                                                                                                                            <  2:190232‑M1/16‑1 (MQ=255)
  tttttcattattccccatagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggatcaccgaagaatagtatagcaACTACTACAATAACTGt                                                                                                                           >  2:94164‑M1/124‑140 (MQ=255)
   ttttcatttttccccatagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGtt                                                                                                                          >  2:439595‑M1/123‑140 (MQ=255)
     ttcatttttccccttagttgaacgacaatgaagattgaatatattacacaagaaataaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTaa                                                                                                                        >  1:56190‑M1/121‑140 (MQ=255)
      ttattattccccatagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAAt                                                                                                                       >  2:296075‑M1/120‑140 (MQ=255)
      tccttattccccatagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAAt                                                                                                                       >  2:458067‑M1/120‑140 (MQ=255)
      tcattattccccatagcggaacggcaatgaagattgaagagaatgcaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtaaagcaACTACTACAATAACTGTCAAt                                                                                                                       <  2:294701‑M1/21‑1 (MQ=255)
       cattattccccatagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATa                                                                                                                      <  2:157407‑M1/22‑1 (MQ=255)
        attcttccccagagctgaacggcaatgaagatttaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtagaagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATAc                                                                                                                     >  2:446656‑M1/118‑140 (MQ=255)
         ttattccccatagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACt                                                                                                                    <  1:236198‑M1/24‑1 (MQ=255)
            ttccccatagcggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTa                                                                                                                 >  2:158501‑M1/114‑140 (MQ=255)
                   tagcggaacggcaatgaagattgaagagaatacaccagagatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTg                                                                                                          >  2:280459‑M1/107‑140 (MQ=255)
                       ggaacggcaatgaagattgcaatgactgctccaaaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACg                                                                                                      <  1:404809‑M1/38‑1 (MQ=255)
                       ggaacggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACg                                                                                                      <  1:518785‑M1/38‑1 (MQ=255)
                            tgcaatgaagatttaagagaataaactagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCa                                                                                                 >  1:324794‑M1/98‑140 (MQ=255)
                            ggcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCa                                                                                                 >  2:455652‑M1/98‑140 (MQ=255)
                             gcaatgaagattgaagagaatacaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTAGTAATTGAACGGGTCAt                                                                                                <  2:295007‑M1/44‑1 (MQ=255)
                                           agagaatacaccagaaatcaatccggtaaataatgctaaagtaaagttgaatatcgtaggagcaccaaagaatagtatagaaACTACTACAATAACTATTAATACTGTATTAATTGAACGTTTCATTGTCTGTCAAATTg                                                                                  <  1:421792‑M1/58‑1 (MQ=255)
                                                 tacaccagaaatcaatcagataaataatgctaaaataaagtaaaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTAt                                                                            >  1:101276‑M1/77‑140 (MQ=255)
                                                  acaccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTATAATTGATCTAtt                                                                           <  2:343074‑M1/65‑1 (MQ=255)
                                                  acaaaagaaatcaatccgataaataatgctaaagtaaagtcgaatctcgtaggagcaccgcagaatagtatagcaACTACTCCAATAACTGTTAATACTGTATTAATTAAAGGTGTAATGGGCTGTATACTTGATCTAtt                                                                           <  2:509504‑M1/65‑1 (MQ=255)
                                                   caccagaaatcaatccgataaataatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTa                                                                          <  1:171456‑M1/66‑1 (MQ=255)
                                                         aaatcaatccgataaataatgctaaagtaaagtggaatatcgtaggggcacggaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGAaatattagcgtaa                                                                    <  2:179080‑M1/72‑7 (MQ=255)
                                                               atccgataaaaaatgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATACCTGTTAACATTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATAtcatca                                                              >  2:153214‑M1/63‑140 (MQ=255)
                                                                            tgctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCtgttg                                                 <  1:431287‑M1/91‑1 (MQ=255)
                                                                             gctaaagtaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCtgttgt                                                >  2:236198‑M1/49‑140 (MQ=255)
                                                                                  aggaaagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTaa                                           >  1:374786‑M1/44‑140 (MQ=255)
                                                                                      aagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCACTTTGTTCTGTTTTCGTAATCAc                                       <  2:205024‑M1/101‑1 (MQ=255)
                                                                                      aagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATAATCAATTTGTTCTGTTGTCGTAATCAc                                       <  2:530633‑M1/101‑1 (MQ=255)
                                                                                      aagttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTACAATTGATCGATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCAc                                       >  2:2773‑M1/40‑140 (MQ=255)
                                                                                       atttgaatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTACCGCTATCATCAATTTGTTGTGTGGGCGTAATCACt                                      >  2:335108‑M1/39‑140 (MQ=255)
                                                                                       atttgaatatcgaaggtgaacctatgtatgttatggcaACTACTACAATATCTGTTAATACTGTATTAATTGAATGTGTCATTGTCTGTCTAATTGATCTATTAACTATATCATCAATTTGTTCTGTTGTCGTAATCACt                                      >  2:131880‑M1/39‑140 (MQ=255)
                                                                                            aatatcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCACATTGGCTTGTTATTGTAATCACCttacc                                 <  1:99146‑M1/107‑3 (MQ=255)
                                                                                               atcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCtt                              >  2:536129‑M1/31‑140 (MQ=255)
                                                                                               atcgtaggagcaccgaagaatagtatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCtt                              >  2:293677‑M1/31‑140 (MQ=255)
                                                                                                tcgtaggtgcaccgaagaataggatagcaACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACCATAGCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCttt                             >  2:2742‑M1/30‑140 (MQ=255)
                                                                                                                           atacaactacAAGAACTGTTAAAACTGTATTAATTGAACTAGTCATTGTCTGTCTATTTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCTTTTGTAAGTTTTCACGTACACGGTCaaat  <  2:423198/139‑2 (MQ=255)
                                                                                                                             |                                                                                                                                         
TTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATACACCAGAAATCAATCCGATAAATAATGCTAAAGTAAAGTTGAATATCGTAGGAGCACCGAAGAATAGTATAGCAACTACTACTACAATAACTGTTAATACTGTATTAATTGAACGTGTCATTGTCTGTCTAATTGATCTATTAACGATATCATCAATTTGTTCTGTTGTCGTAATCACTTTAACCTTTTGTAAGTTTTCACGTACACGGTCAAAC  >  CP000730/1747252‑1747514

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑