mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.26.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 4,542,704 | 0 | A→. | 100.0% | 3.0 | 3 | intergenic (+71/‑411) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| * | NC_000913 | 255,923 | 1 | .→T | 1.0% | 1.8 0.0 ‑0.4 | 200 | intergenic (‑207/‑54) | pepD/gpt | aminoacyl‑histidine dipeptidase (peptidase D)/xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase |
| * | NC_000913 | 2,338,957 | 1 | .→T | 1.0% | 1.8 0.0 ‑0.2 | 197 | coding (464/2628 nt) | gyrA | DNA gyrase (type II topoisomerase), subunit A |
| * | NC_000913 | 951,974 | 1 | .→A | 1.0% | 1.7 0.0 ‑0.3 | 200 | coding (1581/2283 nt) | pflB | formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 |
| * | NC_000913 | 1,100,772 | 1 | .→A | 1.0% | 1.7 0.0 ‑0.4 | 199 | coding (477/492 nt) | ycdZ | DUF1097 family inner membrane protein |
| * | NC_000913 | 3,223,850 | 1 | .→A | 1.0% | 1.7 0.0 ‑0.3 | 202 | coding (1218/3093 nt) | ebgA | evolved beta‑D‑galactosidase, alpha subunit |
| * | NC_000913 | 1,153,398 | 1 | .→G | 0.9% | 1.5 0.0 ‑0.3 | 212 | coding (99/810 nt) | pabC | 4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| * | NC_000913 | 2,815,432 | 1 | .→G | 1.0% | 1.5 0.0 ‑0.3 | 192 | coding (1008/1557 nt) | gshA | glutamate‑cysteine ligase |
| * | NC_000913 | 3,820,889 | 2 | .→G | 1.0% | 1.5 0.0 ‑0.4 | 194 | coding (282/1683 nt) | ligB | DNA ligase, NAD(+)‑dependent |
| * | NC_000913 | 1,637,664 | 0 | G→T | 100.0% | 1.4 | 3 | A40E (GCA→GAA) | gnsB | Qin prophage; multicopy suppressor of secG(Cs) and fabA6(Ts) |
| * | NC_000913 | 4,085,443 | 1 | .→C | 0.9% | 1.4 0.0 ‑0.4 | 217 | coding (380/3051 nt) | fdoG | formate dehydrogenase‑O, large subunit |
| * | NC_000913 | 1,300,547 | 0 | A→C | 100.0% | 1.3 | 1 | intergenic (+1302/‑635) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 1,811,594 | 1 | .→C | 1.0% | 1.3 0.0 ‑0.2 | 199 | coding (661/1392 nt) | ydjN | putative transporter |
| * | NC_000913 | 3,820,889 | 1 | .→G | 1.0% | 1.3 0.0 ‑0.3 | 194 | coding (282/1683 nt) | ligB | DNA ligase, NAD(+)‑dependent |
| * | NC_000913 | 2,458,289 | 1 | .→A | 1.0% | 1.2 0.0 ‑0.0 | 204 | coding (871/2145 nt) | fadJ | enoyl‑CoA hydratase/epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
| * | NC_000913 | 3,584,599 | 0 | A→C | 100.0% | 1.2 | 1 | intergenic (+290/‑160) | yrhA/yrhB | pseudogene, interrupted by IS1E/stable heat shock chaperone |
| * | NC_000913 | 3,918,500 | 1 | .→G | 1.0% | 1.2 0.0 ‑0.1 | 196 | coding (1358/1542 nt) | atpA | F1 sector of membrane‑bound ATP synthase, alpha subunit |
| * | NC_000913 | 1,300,657 | 0 | C→A | 100.0% | 1.0 | 1 | intergenic (+1412/‑525) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 1,300,667 | 0 | G→T | 100.0% | 1.0 | 1 | intergenic (+1422/‑515) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 1,907,038 | 1 | .→A | 1.0% | 1.0 0.0 ‑0.1 | 202 | coding (23/810 nt) | rlmA | 23S rRNA m(1)G745 methyltransferase, SAM‑dependent |
| * | NC_000913 | 3,263,769 | 1 | .→C | 0.9% | 1.0 0.0 ‑0.2 | 228 | coding (1249/1332 nt) | tdcC | L‑threonine/L‑serine transporter |
| * | NC_000913 | 718,694 | 1 | .→C | 1.0% | 0.9 0.0 ‑0.1 | 195 | coding (1767/2199 nt) | speF | ornithine decarboxylase isozyme, inducible |
| * | NC_000913 | 2,069,227 | 0 | A→C | 100.0% | 0.9 | 1 | F211V (TTC→GTC) | insD1 | IS2 transposase TnpB |
| * | NC_000913 | 3,060,789 | 1 | .→G | 1.0% | 0.9 0.0 ‑0.0 | 196 | intergenic (+143/‑61) | argP/scpA | transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor/methylmalonyl‑CoA mutase |
| * | NC_000913 | 3,152,563 | 1 | .→C | 1.0% | 0.9 0.0 ‑0.1 | 201 | coding (328/1188 nt) | metC | cystathionine beta‑lyase, PLP‑dependent |
| * | NC_000913 | 3,797,027 | 0 | T→G | 100.0% | 0.9 | 1 | I27R (ATA→AGA) | waaL | O‑antigen ligase |
| * | NC_000913 | 166,174 | 1 | .→T | 1.0% | 0.8 0.0 ‑0.0 | 209 | coding (1445/2535 nt) | mrcB | fused glycosyl transferase and transpeptidase |
| * | NC_000913 | 1,300,624 | 0 | C→G | 100.0% | 0.8 | 1 | intergenic (+1379/‑558) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 3,424,106 | 0 | G→T | 100.0% | 0.7 | 1 | noncoding (2678/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 1,300,523 | 0 | A→C | 100.0% | 0.6 | 1 | intergenic (+1278/‑659) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 1,300,649 | 0 | G→A | 100.0% | 0.6 | 1 | intergenic (+1404/‑533) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 1,300,651 | 0 | C→T | 100.0% | 0.6 | 1 | intergenic (+1406/‑531) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 1,300,676 | 0 | C→G | 100.0% | 0.6 | 1 | intergenic (+1431/‑506) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 3,424,183 | 0 | G→T | 100.0% | 0.6 | 1 | noncoding (2601/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 1,300,659 | 0 | G→A | 100.0% | 0.5 | 1 | intergenic (+1414/‑523) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 1,300,680 | 0 | T→A | 100.0% | 0.5 | 1 | intergenic (+1435/‑502) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 1,300,682 | 0 | T→A | 100.0% | 0.5 | 1 | intergenic (+1437/‑500) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 1,300,694 | 0 | C→A | 100.0% | 0.5 | 1 | intergenic (+1449/‑488) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 3,426,560 | 0 | A→T | 100.0% | 0.5 | 1 | noncoding (224/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 763,983 | 1 | .→G | 0.9% | 0.4 0.0 ‑0.0 | 217 | coding (970/1167 nt) | sucC | succinyl‑CoA synthetase, beta subunit |
| * | NC_000913 | 1,300,597 | 0 | A→C | 100.0% | 0.4 | 1 | intergenic (+1352/‑585) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |