mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 838,239 | 0 | G | T | 54.4% | 6.7 / 70.4 | 46 | A73D (GCT→GAT) | ybiI | DksA‑type zinc finger protein |
| * | NC_000913 | 3,475,333 | 0 | C | A | 47.1% | 5.8 / 74.9 | 51 | *129L (TGA→TTA) | tusD | sulfurtransferase for 2‑thiolation step of mnm(5)‑s(2)U34‑tRNA synthesis |
| * | NC_000913 | 2,004,616 | 0 | A | C | 45.0% | 18.0 / 44.5 | 40 | T249P (ACC→CCC) | fliD | flagellar filament capping protein |
| * | NC_000913 | 4,296,268 | 0 | T | C | 23.1% | 38.7 / 10.2 | 27 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 31 (0.760) | 5 (0.130) | 5/566 | 4.5 | 14.0% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 32 (0.830) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1460521 | 50 (1.220) | 5 (0.130) | 5/584 | 4.7 | 9.4% | coding (51/423 nt) | paaI | hydroxyphenylacetyl‑CoA thioesterase |
| ? | NC_000913 | = 1460536 | 48 (1.200) | coding (66/423 nt) | paaI | hydroxyphenylacetyl‑CoA thioesterase | |||||
| * | ? | NC_000913 | 1207790 = | 32 (0.780) | 4 (0.100) | 4/566 | 5.0 | 11.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 33 (0.850) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 3817574 = | 59 (1.440) | 4 (0.100) | 4/580 | 5.1 | 6.2% | intergenic (+35/‑186) | yicC/dinD | UPF0701 family protein/DNA damage‑inducible protein |
| ? | NC_000913 | 3817604 = | 63 (1.590) | intergenic (+65/‑156) | yicC/dinD | UPF0701 family protein/DNA damage‑inducible protein | |||||
| * | ? | NC_000913 | = 2098422 | 59 (1.440) | 4 (0.100) | 4/582 | 5.1 | 6.8% | intergenic (‑121/+25) | wzzB/ugd | regulator of length of O‑antigen component of lipopolysaccharide chains/UDP‑glucose 6‑dehydrogenase |
| ? | NC_000913 | = 2098429 | 53 (1.330) | intergenic (‑128/+18) | wzzB/ugd | regulator of length of O‑antigen component of lipopolysaccharide chains/UDP‑glucose 6‑dehydrogenase | |||||
| * | ? | NC_000913 | = 887391 | 36 (0.880) | 3 (0.080) | 3/580 | 5.7 | 7.8% | intergenic (‑52/‑32) | ybjJ/rcdA | putative drug efflux MFS transporter, inner membrane protein/transcriptional regulator of csgD and ybiJI; autoregulator |
| ? | NC_000913 | = 887393 | 36 (0.910) | intergenic (‑54/‑30) | ybjJ/rcdA | putative drug efflux MFS transporter, inner membrane protein/transcriptional regulator of csgD and ybiJI; autoregulator | |||||
| * | ? | NC_000913 | 3353377 = | 36 (0.880) | 5 (0.120) | 3/598 | 5.8 | 11.6% | coding (674/930 nt) | yhcC | putative Fe‑S oxidoreductase, Radical SAM superfamily protein |
| ? | NC_000913 | 3918909 = | 40 (0.980) | coding (949/1542 nt) | atpA | F1 sector of membrane‑bound ATP synthase, alpha subunit | |||||
| * | ? | NC_000913 | = 2518146 | 42 (1.030) | 3 (0.070) | 3/598 | 5.8 | 6.9% | intergenic (‑30/+10) | alaX/alaW | tRNA‑Ala/tRNA‑Ala |
| ? | NC_000913 | 3401369 = | 39 (0.950) | intergenic (‑282/+23) | mreB/csrD | cell wall structural complex MreBCD, actin‑like component MreB/targeting factor for csrBC sRNA degradation | |||||
| * | ? | NC_000913 | 82098 = | 42 (1.030) | 3 (0.070) | 3/588 | 5.8 | 7.1% | coding (1432/1572 nt) | leuA | 2‑isopropylmalate synthase |
| ? | NC_000913 | 82114 = | 37 (0.920) | coding (1416/1572 nt) | leuA | 2‑isopropylmalate synthase | |||||