mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 310 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,890 | 0 | C | A | 55.9% | 5.5 / 46.8 | 34 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 941,713 | 0 | T | G | 55.6% | 49.6 / 96.7 | 63 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 3,206,435 | 0 | C | T | 50.9% | 32.0 / 74.7 | 53 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 1,376,505 | 0 | A | C | 50.0% | 51.3 / 16.9 | 42 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 1,413,735 | 0 | A | T | 48.8% | 36.5 / 31.1 | 41 | Y2* (TAT→TAA) | ydaC | DUF1187 family protein, Rac prophage; putative double‑strand break reduction protein |
| * | NC_000913 | 1,097,581 | 0 | A | G | 48.7% | 51.3 / 17.3 | 39 | noncoding (72/88 nt) | serX | tRNA‑Ser |
| * | NC_000913 | 1,222,596 | 0 | G | A | 48.7% | 26.1 / 26.1 | 39 | F13F (TTC→TTT) | ymgD | uncharacterized protein |
| * | NC_000913 | 357,880 | 0 | T | C | 48.6% | 32.0 / 16.3 | 37 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,423,297 | 0 | G | C | 46.7% | 67.9 / 37.1 | 61 | intergenic (+103/+126) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| * | NC_000913 | 1,622,816 | 0 | G | A | 46.3% | 24.8 / 38.7 | 41 | intergenic (+75/+144) | yneM/dgcZ | inner membrane‑associated protein/diguanylate cyclase, zinc‑sensing |
| * | NC_000913 | 1,163,371 | 0 | C | T | 45.5% | 51.7 / 26.3 | 44 | L38F (CTC→TTC) | thiK | thiamine kinase |
| * | NC_000913 | 1,755,871 | 0 | T | A | 45.3% | 67.6 / 29.4 | 53 | G58G (GGT→GGA) | pykF | pyruvate kinase I |
| * | NC_000913 | 3,423,294 | 0 | T | C | 44.6% | 65.7 / 21.8 | 65 | intergenic (+100/+129) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| * | NC_000913 | 1,622,815 | 0 | C | A | 43.6% | 49.3 / 22.5 | 41 | intergenic (+74/+145) | yneM/dgcZ | inner membrane‑associated protein/diguanylate cyclase, zinc‑sensing |
| * | NC_000913 | 5,159 | 0 | G | A | 43.5% | 61.9 / 38.6 | 62 | intergenic (+139/‑75) | thrC/yaaX | L‑threonine synthase/DUF2502 family putative periplasmic protein |
| * | NC_000913 | 2,984,441 | 0 | A | C | 43.1% | 106.7 / 14.4 | 58 | G384G (GGT→GGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 4,346,675 | 0 | T | G | 42.9% | 132.8 / 13.4 | 77 | T218P (ACC→CCC) | fumB | anaerobic class I fumarate hydratase (fumarase B) |
| * | NC_000913 | 1,036,927 | 0 | T | A | 42.5% | 49.2 / 26.5 | 47 | L60Q (CTA→CAA) | hyaF | hydrogenase‑1 protein nickel incorporation factor |
| * | NC_000913 | 1,097,593 | 0 | G | C | 42.5% | 73.2 / 17.1 | 40 | noncoding (60/88 nt) | serX | tRNA‑Ser |
| * | NC_000913 | 3,443,277 | 0 | A | C | 42.4% | 104.2 / 23.6 | 59 | V274G (GTA→GGA) | secY | preprotein translocase membrane subunit |