mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 495 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,890 | 0 | C | A | 51.1% | 16.8 / 59.6 | 47 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 2,984,441 | 0 | A | C | 50.6% | 103.4 / 141.2 | 82 | G384G (GGT→GGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 599,576 | 0 | T | G | 46.8% | 104.8 / 34.8 | 80 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 3,585,086 | 0 | A | C | 45.1% | 96.6 / 21.4 | 71 | Y580D (TAC→GAC) | ggt | gamma‑glutamyltranspeptidase |
| * | NC_000913 | 3,261,055 | 0 | A | C | 44.8% | 136.4 / 20.3 | 87 | V455G (GTG→GGG) | tdcE | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase |
| * | NC_000913 | 1,621,118 | 0 | A | C | 43.4% | 111.3 / 18.2 | 77 | V7G (GTG→GGG) | eamA | cysteine and O‑acetyl‑L‑serine efflux system |
| * | NC_000913 | 535,901 | 0 | T | G | 43.0% | 126.0 / 21.6 | 86 | G64G (GGT→GGG) | hyi | hydroxypyruvate isomerase |
| * | NC_000913 | 2,228,275 | 0 | T | C | 42.5% | 94.8 / 14.3 | 73 | pseudogene (335/1287 nt) | mdtQ | pseudogene; putative channel/filament proteins |
| * | NC_000913 | 1,764,785 | 0 | T | A | 40.6% | 82.1 / 38.3 | 64 | intergenic (‑399/+149) | sufA/ydiH | Fe‑S cluster assembly protein/uncharacterized protein |
| * | NC_000913 | 357,880 | 0 | T | C | 40.0% | 70.0 / 12.3 | 51 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,443,277 | 0 | A | C | 39.4% | 113.3 / 26.9 | 72 | V274G (GTA→GGA) | secY | preprotein translocase membrane subunit |
| * | NC_000913 | 3,465,167 | 0 | G | T | 39.4% | 108.6 / 32.9 | 71 | C29F (TGT→TTT) | gspM | general secretory pathway component, cryptic |
| * | NC_000913 | 366,526 | 0 | T | G | 39.2% | 136.6 / 19.7 | 74 | T329P (ACC→CCC) | lacI | lactose‑inducible lac operon transcriptional repressor |
| * | NC_000913 | 4,538,109 | 0 | A | C | 38.2% | 128.1 / 17.9 | 71 | G219G (GGT→GGG) | nanM | N‑acetylneuraminic acid mutarotase |
| * | NC_000913 | 357,875 | 0 | A | T | 38.2% | 77.1 / 17.9 | 55 | N272K (AAT→AAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 941,713 | 0 | T | G | 38.0% | 161.2 / 31.7 | 92 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 3,423,290 | 0 | A | C | 37.9% | 71.2 / 15.4 | 67 | intergenic (+96/+133) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,423,294 | 0 | T | C | 37.9% | 85.6 / 24.8 | 68 | intergenic (+100/+129) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| * | NC_000913 | 2,984,718 | 0 | G | C | 37.2% | 125.3 / 30.0 | 79 | P292R (CCG→CGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 3,133,302 | 0 | T | G | 36.9% | 121.0 / 10.7 | 66 | H219P (CAC→CCC) | yghS | putative ATP‑binding protein |