mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 59 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,622,816 | 0 | G | A | 52.2% | 6.3 / 32.1 | 23 | intergenic (+75/+144) | yneM/dgcZ | inner membrane‑associated protein/diguanylate cyclase, zinc‑sensing |
| * | NC_000913 | 1,622,815 | 0 | C | A | 50.0% | 10.8 / 15.2 | 22 | intergenic (+74/+145) | yneM/dgcZ | inner membrane‑associated protein/diguanylate cyclase, zinc‑sensing |
| * | NC_000913 | 1,413,735 | 0 | A | T | 47.2% | 32.4 / 22.2 | 36 | Y2* (TAT→TAA) | ydaC | DUF1187 family protein, Rac prophage; putative double‑strand break reduction protein |
| * | NC_000913 | 2,248,431 | 0 | A | C | 47.2% | 40.3 / 11.6 | 37 | G34G (GGT→GGG) | lysP | lysine transporter |
| * | NC_000913 | 3,745,509 | 0 | A | T | 45.8% | 43.7 / 26.7 | 48 | T236S (ACC→TCC) | yiaN | 2,3‑diketo‑L‑gulonate TRAP transporter large permease protein |
| * | NC_000913 | 29,496 | 0 | T | A | 45.5% | 47.9 / 21.6 | 44 | intergenic (+301/‑155) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 1,157,271 | 0 | T | G | 44.7% | 56.7 / 10.4 | 39 | G165G (GGT→GGG) | ycfH | putative DNase |
| * | NC_000913 | 4,536,197 | 0 | A | T | 44.4% | 35.9 / 30.2 | 36 | intergenic (+166/+417) | yjhR/nanS | pseudogene, helicase family; putative frameshift suppressor/9‑O‑acetyl N‑acetylneuraminic acid esterase |
| * | NC_000913 | 3,026,941 | 0 | A | C | 44.2% | 50.1 / 16.6 | 43 | E392D (GAA→GAC) | guaD | guanine deaminase |
| * | NC_000913 | 2,532,988 | 0 | G | A | 43.5% | 19.2 / 11.1 | 23 | G194S (GGC→AGC) | cysK | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| * | NC_000913 | 4,457,105 | 0 | A | G | 43.2% | 40.1 / 10.5 | 37 | I441V (ATC→GTC) | mpl | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
| * | NC_000913 | 29,486 | 0 | C | A | 43.2% | 54.5 / 27.1 | 44 | intergenic (+291/‑165) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 3,665,702 | 0 | C | A | 42.1% | 45.9 / 17.8 | 38 | A37S (GCG→TCG) | gadX | acid resistance regulon transcriptional activator; autoactivator |
| * | NC_000913 | 357,890 | 0 | C | A | 41.9% | 28.0 / 11.7 | 31 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 1,413,761 | 0 | C | T | 41.7% | 46.7 / 18.5 | 36 | G56E (GGA→GAA) | ralR | Rac prophage; restriction alleviation protein |
| * | NC_000913 | 3,745,494 | 0 | C | T | 41.5% | 35.9 / 17.7 | 42 | R231C (CGC→TGC) | yiaN | 2,3‑diketo‑L‑gulonate TRAP transporter large permease protein |
| * | NC_000913 | 3,206,435 | 0 | C | T | 41.0% | 43.6 / 18.7 | 40 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 2,676,106 | 0 | C | A | 40.7% | 33.5 / 11.1 | 27 | L240F (TTG→TTT) | yphD | putative sugar ABC transporter permease |
| * | NC_000913 | 3,601,160 | 0 | G | A | 40.7% | 31.8 / 11.0 | 28 | F309F (TTC→TTT) | ftsX | putative ABC transporter permease |
| * | NC_000913 | 2,984,718 | 0 | G | C | 40.5% | 53.3 / 15.9 | 44 | P292R (CCG→CGG) | yqeF | short chain acyltransferase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 37 (0.930) | 8 (0.220) | 8/266 | 4.1 | 20.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 28 (0.790) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||