mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 677 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,151,686 | 0 | G | T | 49.2% | 9.7 / 37.0 | 64 | intergenic (+40/+25) | yegJ/yegK | uncharacterized protein/ser/thr phosphatase‑related protein |
| * | NC_000913 | 1,489,174 | 0 | G | T | 48.6% | 74.9 / 41.8 | 72 | G315C (GGT→TGT) | aldA | aldehyde dehydrogenase A, NAD‑linked |
| * | NC_000913 | 599,576 | 0 | T | G | 47.5% | 100.2 / 26.9 | 81 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 1,376,505 | 0 | A | C | 46.8% | 116.2 / 14.8 | 79 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 3,270,455 | 0 | G | T | 45.5% | 47.1 / 22.0 | 44 | intergenic (+853/+170) | yhaC/garK | pentapetide repeats‑related protein/glycerate kinase I |
| * | NC_000913 | 3,508,662 | 0 | T | A | 45.1% | 102.0 / 34.6 | 71 | E384D (GAA→GAT) | yhfW | phosphopentomutase‑related metalloenzyme superfamily protein |
| * | NC_000913 | 266,358 | 0 | T | G | 44.6% | 83.0 / 23.2 | 67 | T66P (ACC→CCC) | yafY | lipoprotein, inner membrane; degP regulator; CP4‑6 prophage |
| * | NC_000913 | 786,855 | 0 | A | C | 44.6% | 138.2 / 23.1 | 83 | G247G (GGT→GGG) | gpmA | phosphoglyceromutase 1 |
| * | NC_000913 | 1,621,118 | 0 | A | C | 43.7% | 94.4 / 25.6 | 72 | V7G (GTG→GGG) | eamA | cysteine and O‑acetyl‑L‑serine efflux system |
| * | NC_000913 | 2,434,861 | 0 | G | T | 43.4% | 77.3 / 41.3 | 76 | P259Q (CCA→CAA) | truA | tRNA pseudouridine(38‑40) synthase |
| * | NC_000913 | 941,713 | 0 | T | G | 43.3% | 84.5 / 32.5 | 67 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 599,579 | 0 | T | G | 42.5% | 128.9 / 10.2 | 81 | V289G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 3,508,657 | 0 | A | G | 42.0% | 96.0 / 21.4 | 69 | F386S (TTC→TCC) | yhfW | phosphopentomutase‑related metalloenzyme superfamily protein |
| * | NC_000913 | 2,001,636 | 0 | A | C | 42.0% | 131.6 / 16.4 | 81 | L52V (TTA→GTA) | fliA | RNA polymerase, sigma 28 (sigma F) factor |
| * | NC_000913 | 357,890 | 0 | C | A | 41.9% | 41.9 / 21.1 | 44 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 2,434,882 | 0 | T | G | 41.6% | 129.0 / 34.8 | 89 | Y252S (TAC→TCC) | truA | tRNA pseudouridine(38‑40) synthase |
| * | NC_000913 | 266,349 | 0 | C | A | 41.5% | 120.7 / 36.7 | 65 | V69F (GTT→TTT) | yafY | lipoprotein, inner membrane; degP regulator; CP4‑6 prophage |
| * | NC_000913 | 3,486,386 | 0 | G | A | 41.5% | 59.0 / 21.3 | 53 | A89A (GCG→GCA) | crp | cAMP‑activated global transcription factor, mediator of catabolite repression |
| * | NC_000913 | 4,580,642 | 0 | G | T | 41.3% | 98.2 / 30.5 | 63 | S274* (TCA→TAA) | hsdS | specificity determinant for hsdM and hsdR |
| * | NC_000913 | 115,797 | 0 | C | A | 40.9% | 80.8 / 33.9 | 67 | E435* (GAA→TAA) | hofB | T2SE secretion family protein; P‑loop ATPase superfamily protein |