mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 406 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 993,917 | 0 | A | C | 61.7% | 23.4 / 57.5 | 47 | V43G (GTG→GGG) | ssuB | aliphatic sulfonate ABC transporter ATPase |
| * | NC_000913 | 993,901 | 0 | A | C | 54.4% | 64.4 / 75.7 | 46 | G48G (GGT→GGG) | ssuB | aliphatic sulfonate ABC transporter ATPase |
| * | NC_000913 | 993,913 | 0 | G | C | 53.2% | 54.1 / 76.0 | 47 | G44G (GGC→GGG) | ssuB | aliphatic sulfonate ABC transporter ATPase |
| * | NC_000913 | 1,376,505 | 0 | A | C | 47.4% | 73.6 / 26.5 | 57 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 2,781,645 | 0 | A | C | 46.7% | 117.6 / 22.6 | 76 | V361G (GTT→GGT) | ypjA | adhesin‑like autotransporter |
| * | NC_000913 | 4,378,802 | 0 | A | C | 46.6% | 97.8 / 13.4 | 59 | V48G (GTA→GGA) | ampC | penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| * | NC_000913 | 357,880 | 0 | T | C | 45.5% | 54.3 / 13.0 | 44 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,693,390 | 0 | T | G | 44.0% | 36.3 / 146.6 | 91 | K616T (AAA→ACA) | bcsA | cellulose synthase, catalytic subunit |
| * | NC_000913 | 3,578,301 | 0 | A | C | 43.6% | 85.7 / 14.9 | 55 | G142G (GGT→GGG) | gntR | d‑gluconate inducible gluconate regulon transcriptional repressor |
| * | NC_000913 | 2,001,911 | 0 | G | A | 42.9% | 56.0 / 33.4 | 56 | intergenic (‑122/+199) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| * | NC_000913 | 4,332,791 | 0 | A | C | 42.9% | 121.9 / 11.2 | 63 | V161G (GTG→GGG) | basS | sensory histidine kinase in two‑component regulatory system with BasR |
| * | NC_000913 | 4,604,344 | 0 | C | T | 42.9% | 67.8 / 34.1 | 70 | S62F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 3,578,290 | 0 | A | C | 42.3% | 88.1 / 12.6 | 53 | V146G (GTG→GGG) | gntR | d‑gluconate inducible gluconate regulon transcriptional repressor |
| * | NC_000913 | 1,079,468 | 0 | A | G | 41.9% | 55.8 / 12.8 | 43 | D55G (GAT→GGT) | putP | proline:sodium symporter |
| * | NC_000913 | 3,585,086 | 0 | A | C | 41.8% | 127.2 / 15.8 | 67 | Y580D (TAC→GAC) | ggt | gamma‑glutamyltranspeptidase |
| * | NC_000913 | 1,478,324 | 0 | T | G | 41.7% | 131.6 / 17.6 | 72 | G33G (GGT→GGG) | ynbB | putative CDP‑diglyceride synthase |
| * | NC_000913 | 4,133,245 | 0 | A | G | 41.4% | 85.8 / 17.3 | 58 | G210G (GGA→GGG) | metF | 5,10‑methylenetetrahydrofolate reductase |
| * | NC_000913 | 1,435,727 | 0 | G | A | 41.3% | 92.1 / 35.0 | 64 | intergenic (‑108/+33) | uspF/ompN | stress‑induced protein, ATP‑binding protein/outer membrane pore protein N, non‑specific |
| * | NC_000913 | 75,079 | 0 | C | T | 41.1% | 94.6 / 45.3 | 73 | L134L (CTG→CTA) | thiB | thiamine/thiamine pyrophosphate/thiamine monophosphate ABC transporter periplasmic binding protein |
| * | NC_000913 | 3,001,164 | 0 | A | C | 40.8% | 90.9 / 11.4 | 49 | T274P (ACC→CCC) | xdhA | xanthine dehydrogenase, molybdenum binding subunit |