mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 386 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,206,435 | 0 | C | T | 55.8% | 10.9 / 65.5 | 53 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 2,781,645 | 0 | A | C | 50.0% | 69.8 / 15.2 | 56 | V361G (GTT→GGT) | ypjA | adhesin‑like autotransporter |
| * | NC_000913 | 4,378,802 | 0 | A | C | 49.0% | 73.9 / 12.4 | 51 | V48G (GTA→GGA) | ampC | penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| * | NC_000913 | 1,376,505 | 0 | A | C | 46.7% | 58.9 / 17.4 | 45 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 2,921,177 | 0 | A | C | 46.0% | 80.5 / 12.1 | 50 | G308G (GGT→GGG) | gudP | putative D‑glucarate transporter |
| * | NC_000913 | 4,538,109 | 0 | A | C | 45.6% | 93.1 / 25.3 | 68 | G219G (GGT→GGG) | nanM | N‑acetylneuraminic acid mutarotase |
| * | NC_000913 | 1,825,056 | 0 | G | A | 45.3% | 70.9 / 38.6 | 64 | intergenic (‑119/+84) | ves/spy | cold‑ and stress‑inducible protein/periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| * | NC_000913 | 993,917 | 0 | A | C | 45.3% | 73.3 / 12.2 | 53 | V43G (GTG→GGG) | ssuB | aliphatic sulfonate ABC transporter ATPase |
| * | NC_000913 | 993,913 | 0 | G | C | 44.4% | 80.0 / 18.6 | 54 | G44G (GGC→GGG) | ssuB | aliphatic sulfonate ABC transporter ATPase |
| * | NC_000913 | 2,903,692 | 0 | C | A | 44.3% | 83.4 / 44.4 | 61 | intergenic (+318/+1055) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| * | NC_000913 | 3,177,748 | 0 | C | A | 43.5% | 63.2 / 35.2 | 62 | E55* (GAG→TAG) | nudF | ADP‑ribose pyrophosphatase |
| * | NC_000913 | 3,131,440 | 0 | T | C | 43.2% | 50.2 / 10.1 | 37 | G323G (GGA→GGG) | yghQ | putative inner membrane polysaccharide flippase |
| * | NC_000913 | 599,576 | 0 | T | G | 42.9% | 82.1 / 27.8 | 56 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 3,665,702 | 0 | C | A | 42.5% | 145.6 / 68.1 | 113 | A37S (GCG→TCG) | gadX | acid resistance regulon transcriptional activator; autoactivator |
| * | NC_000913 | 1,435,727 | 0 | G | A | 42.3% | 102.9 / 51.5 | 78 | intergenic (‑108/+33) | uspF/ompN | stress‑induced protein, ATP‑binding protein/outer membrane pore protein N, non‑specific |
| * | NC_000913 | 1,755,871 | 0 | T | A | 41.8% | 93.6 / 34.3 | 67 | G58G (GGT→GGA) | pykF | pyruvate kinase I |
| * | NC_000913 | 2,252,660 | 0 | G | T | 41.4% | 91.5 / 32.7 | 58 | E321* (GAA→TAA) | yeiI | putative kinase |
| * | NC_000913 | 385,797 | 0 | T | G | 41.2% | 122.2 / 16.5 | 69 | V189G (GTG→GGG) | tauA | taurine ABC transporter periplasmic binding protein |
| * | NC_000913 | 907,602 | 0 | A | C | 40.4% | 98.9 / 10.4 | 52 | G227G (GGT→GGG) | ybjT | putative NAD‑dependent oxidoreductase |
| * | NC_000913 | 786,855 | 0 | A | C | 40.3% | 109.1 / 12.0 | 62 | G247G (GGT→GGG) | gpmA | phosphoglyceromutase 1 |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 82 (1.220) | 4 (0.060) | 4/280 | 11.8 | 4.8% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 81 (1.280) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||