New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_pgi	= 2024596	39 (1.110)	3 (0.090)	3/274	NT	7.6%	intergenic (+5/+39)	rcsA/dsrB	transcriptional regulator of colanic acid capsular biosynthesis/uncharacterized protein
	?	NC_000913_3_hsa_pgi	= 2024624	34 (0.970)					intergenic (+33/+11)	rcsA/dsrB	transcriptional regulator of colanic acid capsular biosynthesis/uncharacterized protein

TCAAAGCCAAGACCGTTTCATCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAA  >  NC_000913_3_hsa_pgi/2024458‑2024744                                                                                                                                           |                                                                                                                                                     tCAAAGCCAAGACCGTTGCATCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTGTCTACCATGTCGTCCGACGGACGGATAATGTGACTAATGGTATTTTTGTCAACTTGTGCTACCACATcgtgactggt                                                                                                                                            >  2:271392‑M1/1‑139 (MQ=255)  caaacacAAGAACGATTCAAGACATAAAAGTAATATTAAACGTAACATCAAAACGCATAATAAACATGTTATCTACCATGTCGTCCGACTGACTGATAATGTCACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACttgtg                                                                                                                                           <  2:633976/143‑1 (MQ=255)       ccAAGACTGTTTCATCGCATAAAGGTAATAGTAAGCGTAAGATCAAAACGCAGAAGAAACAGGCTATCTACCATGTCGTTCGACGGGCGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTc                                                                                                                                      <  1:593005/149‑1 (MQ=255)       ccAAGACCGTTTCATCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTc                                                                                                                                      <  1:426945/149‑1 (MQ=255)        cAAGACCGTTTCATCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAAAGTGACTAATGATATTTTTTTCACCATTCACTACCACATTCTGACTGTTGATTAcc                                                                                                                                     >  2:149861/1‑149 (MQ=255)         aaGACCGTTTCATCGCAAAAAGGTAATATTAAACGCAAGATCAAAACGCATAAGAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTCGTTTccc                                                                                                                                    <  2:247217/149‑1 (MQ=255)          aGACCGTTTCATCGCATAAAGGTACTATTAAACGTAAGATCACACGGTAGAAGAAACCGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCcca                                                                                                                                   >  2:443867/1‑149 (MQ=255)             ccGTTTCATCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCccacca                                                                                                                                <  1:592393/149‑1 (MQ=255)              cGTTTCATCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAACAACAAGGTTATCTACCATGTCGTCCAACTGACGGCTAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACTTTCTGACTTGTGGTTTCccacccg                                                                                                                               >  2:225646/1‑147 (MQ=255)                tttCATCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTAGACAACAGGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTc                                                                                                                             >  1:17132/1‑149 (MQ=255)                    aTCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGc                                                                                                                         >  2:528437/1‑149 (MQ=255)                       tcATAAAGATAATATTAAACTGAAGATGAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAACGTTACTAATAGTATTTTTGTCAACATGCGCTAACACACTCTTACTAGCGGTGTCCCCCCAGTCACGCTGa                                                                                                                      <  2:649394/148‑1 (MQ=255)                       gCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACAACCTCTATCACAGTCTGCCTGGTGGTTTCCCACCAGCCAGGCTGa                                                                                                                      >  1:348765/1‑149 (MQ=255)                             aGGTAATACTAAACGCAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGa                                                                                                                <  1:12800/149‑1 (MQ=255)                                                  cAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACaaa                                                                                           <  2:187287/149‑1 (MQ=255)                                                   aaaaCGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTGTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAg                                                                                          >  1:588251/1‑149 (MQ=255)                                                    aaaCGCATAATAAACAGTGTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTACCACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGa                                                                                         <  2:346293/149‑1 (MQ=255)                                                           taataaACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGACTACGATTACTCTGCTTTCTCCCCACAGATCCCgcc                                                                                  >  2:11186/1‑147 (MQ=255)                                                           taataaACAGGTTATCTACCATGTCGCCCGAATGACGTATGAGCGGACGAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTc                                                                                  <  1:456183/149‑1 (MQ=255)                                                                 aCAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATcctgactggtgggaaaccaccagtcagaatgtgttagcgcatgt                                                                                                          >  2:217261‑M1/1‑75 (MQ=255)                                                                 aCAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATcctgactggtgggaaaccaccagtcagaatgtgttagcgcatgt                                                                                                          <  1:217261‑M1/119‑45 (MQ=255)                                                                 aCAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATg                                                                            <  2:88836/149‑1 (MQ=255)                                                                    ggTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCAACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATCCCGTCCTGATGccc                                                                         >  1:419835/1‑149 (MQ=255)                                                                       tATCTACCATTTCGTCCGACTGACGGATAATGTGACTAATGTTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCATCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGc                                                                      <  2:554878/149‑1 (MQ=255)                                                                       tATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGc                                                                      <  1:528437/149‑1 (MQ=255)                                                                          cTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACtggtg                                                                                                                                           <  2:340291/77‑1 (MQ=255)                                                                          cTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACtggtg                                                                                                                                           >  1:340291/1‑77 (MQ=255)                                                                                    gtcCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCGTGATGCCCTGCTTCATTAAAGAAc                                                         >  2:372787/1‑149 (MQ=255)                                                                                     tcCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTtctc                                                                                                 >  1:552038/1‑108 (MQ=255)                                                                                     tcCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTtctc                                                                                                 <  2:552038/108‑1 (MQ=255)                                                                                        gACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGa                                                     >  2:356658/1‑149 (MQ=255)                                                                                          cTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATg                                                   <  1:137033/149‑1 (MQ=255)                                                                                             aCGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCg                                                >  1:464972/1‑149 (MQ=255)                                                                                                 aTAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTAAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCg                                            >  1:229886/1‑149 (MQ=255)                                                                                                   aaTGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGTTTCATTAAAGAACCAGATGCCGAGCggg                                          <  1:39451/149‑1 (MQ=255)                                                                                                   aaTGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTAAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCggg                                          <  2:229886/149‑1 (MQ=255)                                                                                                     tgtgACTAATGTTATTTTTGTCAACATGCGCTAACACATTCTGACTTGGGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTa                                        <  1:540085/149‑1 (MQ=255)                                                                                                       tgACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGt                                      >  1:248615/1‑149 (MQ=255)                                                                                                         aCTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTCGTCt                                    >  1:315789/1‑149 (MQ=255)                                                                                                                            aCATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGatgtgttagcgcatgttgacaaaaataccattagtcacattatccgtcagtcggacgacatggtagataacctgt                                               >  2:217261‑M2/1‑44 (MQ=255)                                                                                                                            aCATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGatgtgttagcgcatgttgacaaaaataccattagtcacattatccgtcagtcggacgacatggtagataacctgt                                               <  1:217261‑M2/119‑76 (MQ=255)                                                                                                                             cATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGATGAATAGGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACAAGATGCCAGGCGGGTAATCTTCCAGCGAGACCAGGtcggt                >  2:635323/1‑145 (MQ=255)                                                                                                                                     aaCACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCtt        <  1:208571/149‑1 (MQ=255)                                                                                                                                     aaCACATTCTGACCGGTGGTCTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCtt        <  1:660/149‑1 (MQ=255)                                                                                                                                        acaTTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAGACCAGGTACATTGTGCCTTCAc     >  1:43950/1‑149 (MQ=255)                                                                                                                                        acaTTCTGACTGGTGGTTTCCCACCAGGCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACTGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGGAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCAc     >  1:41318/1‑149 (MQ=255)                                                                                                                                          aTTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTATGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAATCTTCCAGCGAAACCAGGTACATTGTGCCTTCACtg   >  1:525952/1‑148 (MQ=255)                                                                                                                                           ttCTGACTGGTGGTGTCCCACCAGACAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTaa  >  1:575692/1‑149 (MQ=255)                                                                                                                                           |                                                                                                                                                     TCAAAGCCAAGACCGTTTCATCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAA  >  NC_000913_3_hsa_pgi/2024458‑2024744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.