New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_pgi = 202459639 (1.110)3 (0.090) 3/274 NT 7.6% intergenic (+5/+39) rcsA/dsrB transcriptional regulator of colanic acid capsular biosynthesis/uncharacterized protein
?NC_000913_3_hsa_pgi = 2024624 34 (0.970)intergenic (+33/+11) rcsA/dsrB transcriptional regulator of colanic acid capsular biosynthesis/uncharacterized protein

ATCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAACTCCTCAACTGCCAGTAC  >  NC_000913_3_hsa_pgi/2024477‑2024763
                                                                                                                                                   |                                                                                                                                           
aTCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGc                                                                                                                                            >  2:528437/1‑149 (MQ=255)
   tcATAAAGATAATATTAAACTGAAGATGAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAACGTTACTAATAGTATTTTTGTCAACATGCGCTAACACACTCTTACTAGCGGTGTCCCCCCAGTCACGCTGa                                                                                                                                         <  2:649394/148‑1 (MQ=255)
   gCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACAACCTCTATCACAGTCTGCCTGGTGGTTTCCCACCAGCCAGGCTGa                                                                                                                                         >  1:348765/1‑149 (MQ=255)
         aGGTAATACTAAACGCAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGa                                                                                                                                   <  1:12800/149‑1 (MQ=255)
                              cAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACaaa                                                                                                              <  2:187287/149‑1 (MQ=255)
                               aaaaCGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTGTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAg                                                                                                             >  1:588251/1‑149 (MQ=255)
                                aaaCGCATAATAAACAGTGTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTACCACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGa                                                                                                            <  2:346293/149‑1 (MQ=255)
                                       taataaACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGACTACGATTACTCTGCTTTCTCCCCACAGATCCCgcc                                                                                                     >  2:11186/1‑147 (MQ=255)
                                       taataaACAGGTTATCTACCATGTCGCCCGAATGACGTATGAGCGGACGAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTc                                                                                                     <  1:456183/149‑1 (MQ=255)
                                             aCAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATg                                                                                               <  2:88836/149‑1 (MQ=255)
                                                ggTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCAACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATCCCGTCCTGATGccc                                                                                            >  1:419835/1‑149 (MQ=255)
                                                   tATCTACCATTTCGTCCGACTGACGGATAATGTGACTAATGTTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCATCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGc                                                                                         <  2:554878/149‑1 (MQ=255)
                                                   tATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGc                                                                                         <  1:528437/149‑1 (MQ=255)
                                                                gtcCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCGTGATGCCCTGCTTCATTAAAGAAc                                                                            >  2:372787/1‑149 (MQ=255)
                                                                 tcCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTtctc                                                                                                                    <  2:552038/108‑1 (MQ=255)
                                                                 tcCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTtctc                                                                                                                    >  1:552038/1‑108 (MQ=255)
                                                                    gACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGa                                                                        >  2:356658/1‑149 (MQ=255)
                                                                      cTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATg                                                                      <  1:137033/149‑1 (MQ=255)
                                                                         aCGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCg                                                                   >  1:464972/1‑149 (MQ=255)
                                                                             aTAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTAAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCg                                                               >  1:229886/1‑149 (MQ=255)
                                                                               aaTGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGTTTCATTAAAGAACCAGATGCCGAGCggg                                                             <  1:39451/149‑1 (MQ=255)
                                                                               aaTGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTAAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCggg                                                             <  2:229886/149‑1 (MQ=255)
                                                                                 tgtgACTAATGTTATTTTTGTCAACATGCGCTAACACATTCTGACTTGGGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTa                                                           <  1:540085/149‑1 (MQ=255)
                                                                                   tgACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGt                                                         >  1:248615/1‑149 (MQ=255)
                                                                                     aCTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTCGTCt                                                       >  1:315789/1‑149 (MQ=255)
                                                                                                        aCATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGatgtgttagcgcatgttgacaaaaataccattagtcacattatccgtcagtcggacgacatggtagataacctgt                                                                  <  1:217261‑M2/119‑76 (MQ=255)
                                                                                                        aCATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGatgtgttagcgcatgttgacaaaaataccattagtcacattatccgtcagtcggacgacatggtagataacctgt                                                                  >  2:217261‑M2/1‑44 (MQ=255)
                                                                                                         cATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGATGAATAGGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACAAGATGCCAGGCGGGTAATCTTCCAGCGAGACCAGGtcggt                                   >  2:635323/1‑145 (MQ=255)
                                                                                                                 aaCACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCtt                           <  1:208571/149‑1 (MQ=255)
                                                                                                                 aaCACATTCTGACCGGTGGTCTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCtt                           <  1:660/149‑1 (MQ=255)
                                                                                                                    acaTTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAGACCAGGTACATTGTGCCTTCAc                        >  1:43950/1‑149 (MQ=255)
                                                                                                                    acaTTCTGACTGGTGGTTTCCCACCAGGCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACTGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGGAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCAc                        >  1:41318/1‑149 (MQ=255)
                                                                                                                      aTTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTATGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAATCTTCCAGCGAAACCAGGTACATTGTGCCTTCACtg                      >  1:525952/1‑148 (MQ=255)
                                                                                                                       ttCTGACTGGTGGTGTCCCACCAGACAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTaa                     >  1:575692/1‑149 (MQ=255)
                                                                                                                          tGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACTAGGTACATTGTGCCTTCACTAAAct                  >  2:516658/1‑149 (MQ=255)
                                                                                                                             cgggtggtTTCCCACCGGTCAGGCTGAATAAGATTACTCTGCCTTTTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAActcct               <  2:564891/147‑1 (MQ=255)
                                                                                                                                      tCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAACTCCTCAACTGCCa      <  1:641366/149‑1 (MQ=255)
                                                                                                                                      tCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCACTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAACTCCTCAACTGCCa      <  2:305757/149‑1 (MQ=255)
                                                                                                                                      tCCCACCAGACAGGCTGAATAAGATTACACCGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAACTCCTCAACTGCCa      <  1:455566/149‑1 (MQ=255)
                                                                                                                                          accaGTCACGatgtggtagcacaagttgacaaaaataccattagtcacattatccgtccgtcggacgacatggtagacaacctgtttattatgcgttttgatcttacgtttaatattacctttatgcgatgcaacggtcttggctttga  >  2:271392‑M2/1‑10 (MQ=255)
                                                                                                                                                   |                                                                                                                                           
ATCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAACTCCTCAACTGCCAGTAC  >  NC_000913_3_hsa_pgi/2024477‑2024763

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.