New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913_3_hsa_pgi | = 2024596 | 39 (1.110) | 3 (0.090) | 3/274 | NT | 7.6% | intergenic (+5/+39) | rcsA/dsrB | transcriptional regulator of colanic acid capsular biosynthesis/uncharacterized protein |
? | NC_000913_3_hsa_pgi | = 2024624 | 34 (0.970) | intergenic (+33/+11) | rcsA/dsrB | transcriptional regulator of colanic acid capsular biosynthesis/uncharacterized protein |
ATCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAACTCCTCAACTGCCAGTAC > NC_000913_3_hsa_pgi/2024477‑2024763 | aTCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGc > 2:528437/1‑149 (MQ=255) tcATAAAGATAATATTAAACTGAAGATGAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAACGTTACTAATAGTATTTTTGTCAACATGCGCTAACACACTCTTACTAGCGGTGTCCCCCCAGTCACGCTGa < 2:649394/148‑1 (MQ=255) gCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACAACCTCTATCACAGTCTGCCTGGTGGTTTCCCACCAGCCAGGCTGa > 1:348765/1‑149 (MQ=255) aGGTAATACTAAACGCAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGa < 1:12800/149‑1 (MQ=255) cAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACaaa < 2:187287/149‑1 (MQ=255) aaaaCGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTGTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAg > 1:588251/1‑149 (MQ=255) aaaCGCATAATAAACAGTGTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTACCACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGa < 2:346293/149‑1 (MQ=255) taataaACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGACTACGATTACTCTGCTTTCTCCCCACAGATCCCgcc > 2:11186/1‑147 (MQ=255) taataaACAGGTTATCTACCATGTCGCCCGAATGACGTATGAGCGGACGAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTc < 1:456183/149‑1 (MQ=255) aCAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATg < 2:88836/149‑1 (MQ=255) ggTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCAACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATCCCGTCCTGATGccc > 1:419835/1‑149 (MQ=255) tATCTACCATTTCGTCCGACTGACGGATAATGTGACTAATGTTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCATCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGc < 2:554878/149‑1 (MQ=255) tATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGc < 1:528437/149‑1 (MQ=255) gtcCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCGTGATGCCCTGCTTCATTAAAGAAc > 2:372787/1‑149 (MQ=255) tcCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTtctc < 2:552038/108‑1 (MQ=255) tcCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTtctc > 1:552038/1‑108 (MQ=255) gACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGa > 2:356658/1‑149 (MQ=255) cTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATg < 1:137033/149‑1 (MQ=255) aCGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCg > 1:464972/1‑149 (MQ=255) aTAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTAAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCg > 1:229886/1‑149 (MQ=255) aaTGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGTTTCATTAAAGAACCAGATGCCGAGCggg < 1:39451/149‑1 (MQ=255) aaTGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTAAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCggg < 2:229886/149‑1 (MQ=255) tgtgACTAATGTTATTTTTGTCAACATGCGCTAACACATTCTGACTTGGGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTa < 1:540085/149‑1 (MQ=255) tgACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGt > 1:248615/1‑149 (MQ=255) aCTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTCGTCt > 1:315789/1‑149 (MQ=255) aCATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGatgtgttagcgcatgttgacaaaaataccattagtcacattatccgtcagtcggacgacatggtagataacctgt < 1:217261‑M2/119‑76 (MQ=255) aCATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGatgtgttagcgcatgttgacaaaaataccattagtcacattatccgtcagtcggacgacatggtagataacctgt > 2:217261‑M2/1‑44 (MQ=255) cATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGATGAATAGGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACAAGATGCCAGGCGGGTAATCTTCCAGCGAGACCAGGtcggt > 2:635323/1‑145 (MQ=255) aaCACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCtt < 1:208571/149‑1 (MQ=255) aaCACATTCTGACCGGTGGTCTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCtt < 1:660/149‑1 (MQ=255) acaTTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAGACCAGGTACATTGTGCCTTCAc > 1:43950/1‑149 (MQ=255) acaTTCTGACTGGTGGTTTCCCACCAGGCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACTGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGGAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCAc > 1:41318/1‑149 (MQ=255) aTTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTATGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAATCTTCCAGCGAAACCAGGTACATTGTGCCTTCACtg > 1:525952/1‑148 (MQ=255) ttCTGACTGGTGGTGTCCCACCAGACAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTaa > 1:575692/1‑149 (MQ=255) tGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACTAGGTACATTGTGCCTTCACTAAAct > 2:516658/1‑149 (MQ=255) cgggtggtTTCCCACCGGTCAGGCTGAATAAGATTACTCTGCCTTTTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAActcct < 2:564891/147‑1 (MQ=255) tCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAACTCCTCAACTGCCa < 1:641366/149‑1 (MQ=255) tCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCACTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAACTCCTCAACTGCCa < 2:305757/149‑1 (MQ=255) tCCCACCAGACAGGCTGAATAAGATTACACCGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAACTCCTCAACTGCCa < 1:455566/149‑1 (MQ=255) accaGTCACGatgtggtagcacaagttgacaaaaataccattagtcacattatccgtccgtcggacgacatggtagacaacctgtttattatgcgttttgatcttacgtttaatattacctttatgcgatgcaacggtcttggctttga > 2:271392‑M2/1‑10 (MQ=255) | ATCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAACTCCTCAACTGCCAGTAC > NC_000913_3_hsa_pgi/2024477‑2024763 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |