New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913_3_hsa_pgi | = 1435164 | 54 (1.010) | 3 (0.060) | 3/256 | NT | 5.4% | intergenic (‑156/+21) | ttcC/uspF | pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related/stress‑induced protein, ATP‑binding protein |
? | NC_000913_3_hsa_pgi | = 1435170 | 53 (1.050) | intergenic (‑162/+15) | ttcC/uspF | pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related/stress‑induced protein, ATP‑binding protein |
AATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTGCGGCGTTGGAACCGAGCAGATAAGTGGTGATATCCGGTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAA > NC_000913_3_hsa_pgi/1435022‑1435316 | aaTTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATCAAAAACTGTGGCGTGTAAGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAACAAGCCCGCAGCAAtg > 2:542953/1‑149 (MQ=255) tGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGGGTGTAGGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGCAATGAATCAAAAAGCCCGCAGCAATGTGCGGGAGTTa > 1:145205/1‑149 (MQ=255) ggCAACAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAg < 2:348683/149‑1 (MQ=255) tCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTAAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTc > 1:286912/1‑149 (MQ=255) agaagaGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTCTGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAg > 1:99660/1‑149 (MQ=255) agaagaGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAg < 1:444159/149‑1 (MQ=255) gaagaGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGAGAAGTGAATCAAAAAGCCCGCAACAGTGTGCGGGCGTTAGTGTCAga > 1:260176/1‑148 (MQ=255) aagaGTATGCGGCATGCAGGAGGGGCCAGCATAAGAAATCTGATTTAAAAAACTGTGGCGGGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAgcg < 2:77749/149‑1 (MQ=255) tATGAGCCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGAGTAGAGGGGAAAATGTCAGCACATTTGCGAAATGCATCAAAAAGCCCGCAGCAATGTGCGGTCGTTATTGTCAGCGCACaa > 2:424948/1‑149 (MQ=255) aagagtaaTGACGGAAGGCCAAACATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGTACATTCGCGAAATGAATCAAAAAGCCCGCAGTAATGTGCGGGCGTTAGTGTCAGCGCACAAc < 2:904415/142‑1 (MQ=255) gCGTCATGCCGGAACGCCCAGCATAAGAAAACTGATATAAAAAACTGTGGCGTGTATGGTACGGATAAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCTCaagcc > 2:801431/1‑146 (MQ=255) cGTGATGCGGGAACGTACAGCATGAGAAAGGTGATATACAAAACTGGGGTTGGTATGGTACGGATTAGAGGGGAAAATGTCAGCCCATTTGCGAAATGAATCAAAGAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGTACAACCAg < 2:914065/149‑1 (MQ=255) ccGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCAGCAGCAATGTACGGGCGTTAGTATCAGCGCACAACCAGCCCGGAg > 1:706873/1‑149 (MQ=255) ggAACGCCCAGCATAAGAAATCTGATATAAAAAACTGGGGAGTGTATGGACCTTCGAGGGGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCa < 1:531295/149‑1 (MQ=255) gAACGCCCAGAATAAGAAATCTGATTAAAAAAACTGTGGAGTGTATGGTACGGATTAGAGGGGAAGCTAGAAGCATATTCGCGAATGAAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCAc < 1:487241/149‑1 (MQ=255) cccAGCATAAGAAATCTGATAAAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGc < 2:918642/149‑1 (MQ=255) ccAACATAAGGATTCTCATATAAACAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGTAGCACTCTGCg < 1:316282/149‑1 (MQ=255) tAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGGTTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCATCGCACAACCAGCACGGAGCACTCTGCGTGCCGc > 1:320520/1‑149 (MQ=255) tAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGc > 2:870933/1‑149 (MQ=255) tAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGc > 1:855386/1‑149 (MQ=255) aaaTCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTa < 1:273077/149‑1 (MQ=255) tCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGCCGCACTACAg > 1:570141/1‑149 (MQ=255) tGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCt > 1:662434/1‑149 (MQ=255) aaaaCTGTGGAGTGTATGGTACGGATTAGAGGGGAAAAGGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTGCGGCGtt < 1:661761/149‑1 (MQ=255) tgGCGTGTATGGTACGGATTAGAGGGG‑AAAGGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTGCGGCGTTGGAACCGa < 1:412754/149‑1 (MQ=255) tgtATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTGCGGCGTTGGTACCGAGCAg > 2:620287/1‑149 (MQ=255) tATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTGCGGCGTTGGAACCGAGCAGAt > 2:691465/1‑149 (MQ=255) ggTACGGATTAGAGGGGAAAATGTCAGTACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTGCGGCGTTGGAACCGAGCAGATAAg < 1:937583/149‑1 (MQ=255) ggTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTGCGGCGTTGGAACCGAGCAGATAAg < 1:169222/149‑1 (MQ=255) gTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTGCGGCGTTGGAACCGAGCAGATAAgt > 1:991601/1‑149 (MQ=255) atACGGATTAGAGTGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCCCAGCAATGTGCGGGCGTTAGTCTCAGCGCCCAACCAGCACGGACCAATCTCCGTGACGCACTACAGCTTCGGCGTTGGAACCGAGCAGATAAga > 2:10867/2‑148 (MQ=255) tACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTGCGGCGTTGGAACCGAGCAGATAAgtg > 1:777229/1‑149 (MQ=255) aCGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTGCGGCGTTGGAACCGAGCAGATAAgtgg < 2:99660/149‑1 (MQ=255) ggAGTAGAGAGAAAAAGGTCAGCACATTTGCGAAACGAACAACAAAACCCGCACGATGGTGCTGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTGCGGCGTTGGAACCGAGCAGATAAgtggtg < 2:558872/149‑1 (MQ=255) gATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGTGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACACACTACGGCTGCGGCCTTGGACCCGAGCAGATAAgtggggc > 2:103156/1‑146 (MQ=255) tAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACAACAGCTGCGGCGTTGGAACCGAGCAGATAAGTGGTGctat > 1:377042/1‑149 (MQ=255) agGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTGCGGCGTTGGAACCGAGCAGATAAGTGGTGATATCCg > 1:543386/1‑149 (MQ=255) gggAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGa < 1:289556/98‑1 (MQ=255) gggAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGa > 2:289556/1‑98 (MQ=255) gggAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTGCGGCGTTGGAACCGAGCAGATAAgtggt > 2:751755/1‑139 (MQ=255) gggAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTGCGGCGTTGGAACCGAGCAGATAAgtggt < 1:751755/139‑1 (MQ=255) aaaTGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTGCTGCGTTGGAACCGAGCAGATAAGTGGTGATATCCGGTCGAt < 2:202116/149‑1 (MQ=255) aTGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTGCGGCGTTGGAACCGAGCAGATAAGTGGTGATATCCGGTCGATgg < 2:964034/149‑1 (MQ=255) gCACATTTGCGAAATGAATCAAAAAGCGCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTAAAGCTGCGGCGTTGGAACGGAGCCGATAAGTGGTGATATCCGGTCGATGGGAAGCa > 2:938984/1‑149 (MQ=255) gCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTGCGGCGTTGGAACCGAGCAGATAAGTGGTGATATCCGGTCGATGGGAAGCa > 1:957988/1‑149 (MQ=255) acaTTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGAACAACCAGCACGGAGCACTCTGCGTGCCGCACTACAGCTGCGGCGTTGGAACCGAGCAGAAAAATGGTGGTATCCGATCGAGGGGAAGCaac > 2:234493/1‑148 (MQ=255) tttGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTGCGGCGTTGGAACCGAGCAGATAAGTGGTGATATCCGGTCGATGGGAAGCAatgat > 1:22513/1‑149 (MQ=255) gtcGAAATGACTCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGTACGGAGCACTCTGCGTGACGCACTACAGCTGCGGCGTTGGAACCGAGCCGATAAGTGGTGATATCCGGTCGATGGGAAGCAAtgatga < 2:130863/147‑1 (MQ=255) gCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTGCGGCGTTGGAACCGAGCAGATAAGTGGTGATATCCGGTCGATGGGAAGCAATgatgat < 2:570141/149‑1 (MQ=255) gAAATGAATCAAAAAGCCCGCCGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTGCGGCGTTGGAACCGAGCAGATAAGTGGTGATATCCGGTCGATGGGAAGCAATGATGATCa < 1:829674/149‑1 (MQ=255) tCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTGCGGCGTTGGAACCGAGCAGATAAGTGGTGATATCCGGTCGGTGGGAAGCAATGATGATCATATGAgag > 2:599011/1‑147 (MQ=255) cAAAAAGCCCGCAGCAATGtgcgggctttttgattcatttcgcaaatgtgctgacattttcccctctaatccgtacc < 1:31964‑M2/77‑59 (MQ=255) cAAAAAGCCCGCAGCAATGtgcgggctttttgattcatttcgcaaatgtgctgacattttcccctctaatccgtacc > 2:31964‑M2/1‑19 (MQ=255) aaaaaGCCCGCGGCAATGtgcgggctttttgcttcatttcgcaaatgtgctgacattttcccctctaatccgtaccatacacgccacagctttttatatcagatttcttatactgtgctttccggcctcacgcatactcttcttatgcg < 2:21973‑M2/149‑132 (MQ=255) aaaaaGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTGCGGCGTTGGAACCGAGCAGATAAGTGGTGATATCCGGTCGATGGGAAGCAATGATGATCATATGAGCggg < 1:1000658/149‑1 (MQ=255) aaGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTGCGGCGTTGGAACCGAGCAGATAAGTGGTGATATCCGGTCGATGGGAAGCAATGATGATCATATGAGCGGGGAt < 1:67195/149‑1 (MQ=255) cccGCAGCAATGTGCGGGCTTTAGTGTCATCGCACAACCAGCACGGAGCACTCTGTGTGACGCACTACAGCTGCGGCGTTGGAACCGAGCAGATAAGTGGTGATATCCGGTCGATGGGAAGCAATGATGATCATATGAGCGGGGAtctt < 1:597778/149‑1 (MQ=255) ccGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTGCGGCGTTGGAACCGAGCAGATAAGTGGTGATATCCGGTCGTTGGGAAGCAATGATGATCATATGGGCGGGGAtcttc > 2:391836/1‑149 (MQ=255) cagcaATGTGCGGACATTAGTGTCAGCGCACAACCAGAACGGAGCACTCTGCGTGACGGACAACAGCTAAGGCGTTGGAACCAAACAAATAAGTGGTGATATCCACTCGGTGGGAAACATTGATGAGCCTATGCGAGGGGATCttcttc > 2:399067/1‑149 (MQ=255) aggtgCGGGCGTTAGGGGTAGCGTATAACCGGCACGGAGCGCTCTGCGTGGCGCAGTACAGCTGCGGCGTTGGAACCGAGCAGATAAGTGGTGGTATCCGGTCGATGGGAAGCAATGATGATCATATGTGCGGGGATCTTCTTCGCCaa < 2:995723/147‑1 (MQ=255) | AATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTGCGGCGTTGGAACCGAGCAGATAAGTGGTGATATCCGGTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAA > NC_000913_3_hsa_pgi/1435022‑1435316 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |