New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	2192996 =	27 (0.920)	4 (0.150)	4/262	3.5	13.8%	intergenic (‑200/+63)	yehE/mrp	DUF2574 family protein/antiporter inner membrane protein
	?	NC_000913_3_pae_pgi	2193031 =	25 (0.920)					intergenic (‑235/+28)	yehE/mrp	DUF2574 family protein/antiporter inner membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAACTATAGCTGTACATCCACTACACAGCCACGAAGGATGATAATGAAGCATTGCCTGTATGATCAATCGACTTTGTAGAGTTTCGGACGAAGGTCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAATGTAACATCTCTGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTGGAATGACTTCACCCTGCCAGTAGAGCTGAGCTGCAACGCGGTCAGCCAGCTGGCGG  >  NC_000913_3_pae_pgi/2192849‑2193143                                                                                                                                                    |                                                                                                                                                    aaaCTATAGCTGTACATCCACTACACAGCCACGAAGGATGATAATGAAGCATTGCCTGTATGATCACTCGACTTTGTAGAGTTTAGGACGAACGTCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCAGCAATAACTAAt                                                                                                                                                    >  2:414510/1‑149 (MQ=255) aaaCTATAGCTGTACATCCACTACACAGCCACGAAGGATGATAATGAAGCATTGCCTGTATGATCAATCGCCTTTGTAGAGTTTCGGACGAAGGTCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAAt                                                                                                                                                    >  1:36860/1‑149 (MQ=255)             tACATCCCCTACACAGCCACGAAGGATGATAATGAAGCATTGCCTGTATGATCAATCGACTTTGTAGAGTTTCGGACGAAGGTCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCaa                                                                                                                                        <  2:147241/149‑1 (MQ=255)                 tCCACTACACAGCCACGAAGGATGATAATGAAGCATTGCCTGTATGATCAATCGACTTTGTAGAGTTTCGGACGAAGGTCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAATGTa                                                                                                                                    >  1:91826/1‑149 (MQ=255)                    aCTACACAGCCACGAAGGATGATAATGAAGCATTGCCTGTATGATCAATCGACTTTGTAGAGTTTCGGACGAAGGTCCGCAGAATATTCGCAGTATTAAATAAGTGTTGATTAATGCGGCAAAAACTAATACACAGCATCAATGTAACa                                                                                                                                 >  2:171073/1‑149 (MQ=255)                        cacaGCCACGAAGGATGATAATGAAGCATTGCCTGTGTGATCAATCGACTTTGTAGAGTTTCGGACGAAGGTCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAAt                                                                                                                                       >  2:453471/1‑139 (MQ=255)                        cacaGCCACGAAGGATGATAATGAAGCATTGCCTGTGTGATCAATCGACTTTGTAGAGTTTCGGACGAAGGTCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAAt                                                                                                                                       <  1:453471/139‑1 (MQ=255)                                 gAAGGATGATAATGAAGCATTGCCTGTATGATCAATCGACTTTGTAGAGTTTCGGACGAAGGTCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAATGTAACATCTCTGCGGTGTa                                                                                                                    >  2:233597/1‑149 (MQ=255)                                     gatgatAATGAAGCATTGCCTGTATGATCAATCGACTTTGTAGAGTTTCGGACGAAGGTCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAATGTAACATCTCTGCGGTGTATgaa                                                                                                                >  2:367316/1‑149 (MQ=255)                                     gatgatAATGAAGCATTGCCTGTATGATCAATCGACTTTGGAGAGTTTCGGACGAAGGTCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACGGCATCAATGTAACATCTCTGCGGTGTATgaa                                                                                                                >  1:401143/1‑149 (MQ=255)                                      atgatAATGAAGCATTGCCTGTATGATCAATCGACTTTGTAGAGTTTCGGACGAAGGTCCGCAGAATCTTCGCAGTATTAAATAAGTGTTCATTAATGCGACAAAAACTAATAAACCGCATCAATGCTAGATCTTAACGGTGTATgaag                                                                                                               >  1:353732/1‑149 (MQ=255)                                      atgatAATGAAGCATTGCCTGTATGATCAATCGACTTTGTAGAGTTTCGGACGAAGGTCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAATGTAACATCTCTGCGGTGTATgaag                                                                                                               <  1:103060/149‑1 (MQ=255)                                              gAAGCATTGCCTGTATGATCAATCGACTTTGTAGAGTTTCGGACGAAGGTCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAATGTAACATCTCTGCg                                                                                                                         <  1:189970/131‑1 (MQ=255)                                              gAAGCATTGCCTGTATGATCAATCGACTTTGTAGAGTTTCGGACGAAGGTCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAATGTAACATCTCTGCg                                                                                                                         >  2:189970/1‑131 (MQ=255)                                                    ttGCCTGTATGATCAAGCGACTTTGTAGAGTTTCGGACGAAGGTCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAATGTAACATCTCTGCGGTGTATGAAGAATAACCAGAATgg                                                                                                 <  2:264574/149‑1 (MQ=255)                                                       ccTGTATGATCAATCGACTTTGTAGAGTTTCGGACGAAGGTCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAATGTAACATCTCTGCGGTGTATGAAGAATAACCAGAATGGTTa                                                                                              >  1:26117/1‑149 (MQ=255)                                                                               gagTTTCGGACGAAGGTCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATGCACCGCATCAATGTAACATCTCTGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCggaagg                                                                      >  1:393604/1‑149 (MQ=255)                                                                                          gAAGGCCAGCAGAATATTCGCAGTAATAAATGAAGGTTCATTAATGCGGCAAAAACTAAAACACCGCATCAATGTAACATCTCTGCGGAGTATGAAGAAGAACCAGAATGCTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCt                                                           <  2:300323/149‑1 (MQ=255)                                                                                             ggTCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAATGTAACATCTCTGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTgca                                                        >  2:458259/1‑147 (MQ=255)                                                                                               tCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAATGTAACATCTCTGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGGAGAACCTCTCGCCTGGAAt                                                      <  2:322266/149‑1 (MQ=255)                                                                                                   cAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCACATCAATGTAACATCTCTCCGGTGTATGAAGCATAACCAAAATAGTTAATAAGCGTTAAACCGCCCGGACGGAAAACTCGCCTGGCATGACt                                                  >  2:13500/1‑149 (MQ=255)                                                                                                            cGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAATGTAACATCTCTGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTGGAATGACTTCACCCTGc                                         <  1:233597/149‑1 (MQ=255)                                                                                                              cAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAATGTAACATCTCTGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTGGAATGACTTCACCCTGCCa                                       <  1:367316/149‑1 (MQ=255)                                                                                                                   ttAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAATGTAACATCTCTGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTGGAATGACTTCACCCTGCCAGTaga                                  <  1:375057/149‑1 (MQ=255)                                                                                                                      aaTAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAATGTAACATCGCTGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTGGAATGACTTCACCCTGCCAGTAgagct                               >  1:340362/1‑149 (MQ=255)                                                                                                                                                  tAATACACCGCATCAATGTAACATCTCTGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTGGAATGACTTCACCCTGCCAGTAGAGCTGAGCTGCAACGCGGTCAGCCAGCTGGCg   >  2:356816/1‑149 (MQ=255)                                                                                                                                                   aaTACACCGCATCAATGTAACATCTCTGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTGGAATGACTTCACCCTGCCAGTAGAGCTGAGCTGCAACGCGGTCAGCCAGCTGGCgg  <  2:454716/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    AAACTATAGCTGTACATCCACTACACAGCCACGAAGGATGATAATGAAGCATTGCCTGTATGATCAATCGACTTTGTAGAGTTTCGGACGAAGGTCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAATGTAACATCTCTGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTGGAATGACTTCACCCTGCCAGTAGAGCTGAGCTGCAACGCGGTCAGCCAGCTGGCGG  >  NC_000913_3_pae_pgi/2192849‑2193143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.