New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	2192996 =	27 (0.920)	4 (0.150)	4/262	3.5	13.8%	intergenic (‑200/+63)	yehE/mrp	DUF2574 family protein/antiporter inner membrane protein
	?	NC_000913_3_pae_pgi	2193031 =	25 (0.920)					intergenic (‑235/+28)	yehE/mrp	DUF2574 family protein/antiporter inner membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GATGATAATGAAGCATTGCCTGTATGATCAATCGACTTTGTAGAGTTTCGGACGAAGGTCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAATGTAACATCTCTGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTGGAATGACTTCACCCTGCCAGTAGAGCTGAGCTGCAACGCGGTCAGCCAGCTGGCGGTAGATAGCGGTAAATTCGCTCTCCGGACGGCTGATA  >  NC_000913_3_pae_pgi/2192885‑2193179                                                                                                                                                   |                                                                                                                                                     gatgatAATGAAGCATTGCCTGTATGATCAATCGACTTTGTAGAGTTTCGGACGAAGGTCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAATGTAACATCTCTGCGGTGTATgaa                                                                                                                                                    >  2:367316/1‑149 (MQ=255) gatgatAATGAAGCATTGCCTGTATGATCAATCGACTTTGGAGAGTTTCGGACGAAGGTCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACGGCATCAATGTAACATCTCTGCGGTGTATgaa                                                                                                                                                    >  1:401143/1‑149 (MQ=255)  atgatAATGAAGCATTGCCTGTATGATCAATCGACTTTGTAGAGTTTCGGACGAAGGTCCGCAGAATCTTCGCAGTATTAAATAAGTGTTCATTAATGCGACAAAAACTAATAAACCGCATCAATGCTAGATCTTAACGGTGTATgaag                                                                                                                                                   >  1:353732/1‑149 (MQ=255)  atgatAATGAAGCATTGCCTGTATGATCAATCGACTTTGTAGAGTTTCGGACGAAGGTCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAATGTAACATCTCTGCGGTGTATgaag                                                                                                                                                   <  1:103060/149‑1 (MQ=255)                ttGCCTGTATGATCAAGCGACTTTGTAGAGTTTCGGACGAAGGTCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAATGTAACATCTCTGCGGTGTATGAAGAATAACCAGAATgg                                                                                                                                     <  2:264574/149‑1 (MQ=255)                   ccTGTATGATCAATCGACTTTGTAGAGTTTCGGACGAAGGTCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAATGTAACATCTCTGCGGTGTATGAAGAATAACCAGAATGGTTa                                                                                                                                  >  1:26117/1‑149 (MQ=255)                                           gagTTTCGGACGAAGGTCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATGCACCGCATCAATGTAACATCTCTGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCggaagg                                                                                                          >  1:393604/1‑149 (MQ=255)                                                      gAAGGCCAGCAGAATATTCGCAGTAATAAATGAAGGTTCATTAATGCGGCAAAAACTAAAACACCGCATCAATGTAACATCTCTGCGGAGTATGAAGAAGAACCAGAATGCTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCt                                                                                               <  2:300323/149‑1 (MQ=255)                                                         ggTCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAATGTAACATCTCTGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTgca                                                                                            >  2:458259/1‑147 (MQ=255)                                                           tCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAATGTAACATCTCTGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGGAGAACCTCTCGCCTGGAAt                                                                                          <  2:322266/149‑1 (MQ=255)                                                               cAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCACATCAATGTAACATCTCTCCGGTGTATGAAGCATAACCAAAATAGTTAATAAGCGTTAAACCGCCCGGACGGAAAACTCGCCTGGCATGACt                                                                                      >  2:13500/1‑149 (MQ=255)                                                                        cGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAATGTAACATCTCTGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTGGAATGACTTCACCCTGc                                                                             <  1:233597/149‑1 (MQ=255)                                                                          cAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAATGTAACATCTCTGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTGGAATGACTTCACCCTGCCa                                                                           <  1:367316/149‑1 (MQ=255)                                                                               ttAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAATGTAACATCTCTGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTGGAATGACTTCACCCTGCCAGTaga                                                                      <  1:375057/149‑1 (MQ=255)                                                                                  aaTAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAATGTAACATCGCTGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTGGAATGACTTCACCCTGCCAGTAgagct                                                                   >  1:340362/1‑149 (MQ=255)                                                                                                              tAATACACCGCATCAATGTAACATCTCTGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTGGAATGACTTCACCCTGCCAGTAGAGCTGAGCTGCAACGCGGTCAGCCAGCTGGCg                                       >  2:356816/1‑149 (MQ=255)                                                                                                               aaTACACCGCATCAATGTAACATCTCTGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTGGAATGACTTCACCCTGCCAGTAGAGCTGAGCTGCAACGCGGTCAGCCAGCTGGCgg                                      <  2:454716/149‑1 (MQ=255)                                                                                                                 tACACCGCATCAATGTAACATCTCTGCGGTATATCAAGACTAACCAGCGGGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTGGAATGACTTCACCCTGCCAGTAGAGCTGAGCTGCAACGCGGTCAGCCAGCTGGCGGTa                                    <  1:171073/149‑1 (MQ=255)                                                                                                                    acCGCATCAATGTAACATCTCTGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTGGAATGACTTCACCCTGCCAGTAGAGCTGAGCTGCAACGCGGTCAGCCAGCTGGCGGTAGAt                                 >  2:318690/1‑149 (MQ=255)                                                                                                                     ccGCATCAATGTAACATCTCTGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTGGAATGACTTCACCCTGCCAGTAGAGCTGAGCTGCAACGCGGTCAGCCAGCTGGCGGTAGATa                                >  1:162506/1‑149 (MQ=255)                                                                                                                     ccGCATCAATGTAACATCTCTGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTGGAATGACTTCACCCTGCCAGTAGAGCTGAGCTGCAACGCGGTCAGCCAGCTGGCGGTAGATa                                >  2:183917/1‑149 (MQ=255)                                                                                                                                     tctcTGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTGGAATGACTTCACCCTGCCAGTAGAGCTGAGCTGCAACGCGGTCAGCCAGCTGGCGGTAGATAGCGGTAAATTCGctct                <  1:318690/149‑1 (MQ=255)                                                                                                                                     tctcTGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTGGAATGACTTCACCCTGCCAGTAGAGCTGAGCTGCAACGCGGTCAGCCAGCTGGCGGTAGATAGCGGTAAATTCGctct                <  2:393604/149‑1 (MQ=255)                                                                                                                                     tctcGGCGGTGTATGAAGAATAAGCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTGGAATGACTTCACCCTGCCAGTAGAGCTGAGCTGCAACGCGGTCAGCCAGCTGGCGGTAGATAGCGGTAAATTCGctct                <  2:499669/149‑1 (MQ=255)                                                                                                                                       tctGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTGGAATGACTTCACCCTGCCAGTAGAGCTGAGCTGCAACGCGGTCAGCCAGCTGGCGGTAGATAGCGGTAAATTCGCTCTcc              <  1:291853/149‑1 (MQ=255)                                                                                                                                         tGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTg                                                                                              >  1:373872/1‑67 (MQ=255)                                                                                                                                         tGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTg                                                                                              <  2:373872/67‑1 (MQ=255)                                                                                                                                         tGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTGGAATGACTTCACCCTGCCAGTAGAGCTGAGCTGCAACGCGGTCAGCCAGCTGGCGGTAGATAGCGGTAAATTCGCTCTCCgg            >  1:269975/1‑149 (MQ=255)                                                                                                                                                 aTGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTGGAATGACTTCACCCTGCCAGTAGAGCTGAGCTGCAACGCGGTCAGCCAGCTGGCGGTAGATAGCGGTAAATTCGCTCTCCGGACGGCTGa    <  2:353732/149‑1 (MQ=255)                                                                                                                                                   gaagaaTAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTGGAATGACTTCACCCTGCCAGTAGAGCTGAGCTGCAACGCGGTCAGCCAGCTGGCGGTAGATAGCGGTAAATTCGCTCTCCGGACGGCTGATa  <  2:91826/149‑1 (MQ=255)                                                                                                                                                   gaagaaTAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTGGAATGACTTCACCCTGCCAGTAGAGCTGAGCTGCAACGCGGTCAGCCAGCTGACGGTAGATAGCGGTAAATTCGCTCTCCGGACGGCTGATa  >  2:456939/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     GATGATAATGAAGCATTGCCTGTATGATCAATCGACTTTGTAGAGTTTCGGACGAAGGTCCGCAGAATATTCGCAGTATTAAATAAGTGTTCATTAATGCGGCAAAAACTAATACACCGCATCAATGTAACATCTCTGCGGTGTATGAAGAATAACCAGAATGGTTAATAGGCGTTAGACCGCGCGGAAGGAAATCTCGCCTGGAATGACTTCACCCTGCCAGTAGAGCTGAGCTGCAACGCGGTCAGCCAGCTGGCGGTAGATAGCGGTAAATTCGCTCTCCGGACGGCTGATA  >  NC_000913_3_pae_pgi/2192885‑2193179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.