mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 25.4% | 91.3 / 38.5 | 68 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 116 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 781369 = | 64 (0.880) | 20 (0.280) +G |
11/292 | 5.4 | 35.2% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | NC_000913 | = 2521129 | 10 (0.140) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | NC_000913 | = 1207805 | 51 (0.700) | 8 (0.120) | 8/262 | 5.8 | 13.0% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 62 (0.950) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 2729237 = | 108 (1.480) | 8 (0.120) | 7/280 | 6.6 | 7.2% | intergenic (‑53/+132) | rrlG/gltW | 23S ribosomal RNA of rrnG operon/tRNA‑Glu |
| ? | NC_000913 | = 3943624 | NA (NA) | intergenic (+114/‑80) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | = 4542690 | 137 (1.880) | 6 (0.090) | 6/276 | 6.9 | 5.1% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 97 (1.420) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4542682 = | 136 (1.860) | 6 (0.090) | 6/276 | 6.9 | 5.1% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 97 (1.420) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 3779138 | 110 (1.510) | 7 (0.100) | 6/278 | 6.9 | 6.2% | coding (85/777 nt) | lldR | dual role activator/repressor for lldPRD operon |
| ? | NC_000913 | = 3779144 | 107 (1.550) | coding (91/777 nt) | lldR | dual role activator/repressor for lldPRD operon | |||||
| * | ? | NC_000913 | 3166077 = | 85 (1.160) | 8 (0.110) | 6/284 | 7.0 | 9.2% | intergenic (‑104/+34) | parC/ygiS | DNA topoisomerase IV, subunit A/putative ABC transporter permease |
| ? | NC_000913 | 3166102 = | 76 (1.080) | intergenic (‑129/+9) | parC/ygiS | DNA topoisomerase IV, subunit A/putative ABC transporter permease | |||||
| * | ? | NC_000913 | 2808587 = | 77 (1.050) | 6 (0.090) | 6/280 | 7.0 | 7.4% | pseudogene (18/924 nt) | ygaY | pseudogene, major facilitator transporter superfamily;putative transport; Not classified; putative transport protein |
| ? | NC_000913 | 2808609 = | 76 (1.090) | pseudogene (40/924 nt) | ygaY | pseudogene, major facilitator transporter superfamily;putative transport; Not classified; putative transport protein | |||||
| * | ? | NC_000913 | 1570641 = | 77 (1.050) | 5 (0.080) +ATAACGTTGTAAA |
5/268 | 7.2 | 5.7% | intergenic (‑152/+4) | gadC/gadB | glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent |
| ? | NC_000913 | 3666120 = | 106 (1.450) | intergenic (‑310/+60) | gadX/gadA | acid resistance regulon transcriptional activator; autoactivator/glutamate decarboxylase A, PLP‑dependent | |||||
| * | ? | NC_000913 | 781577 = | 48 (0.660) | 29 (0.400) +G |
6/292 | 7.2 | 50.2% | noncoding (1/76 nt) | lysQ | tRNA‑Lys |
| ? | NC_000913 | = 2521129 | 10 (0.140) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||