mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,751,949 | 0 | C | T | 21.6% | 104.0 / 12.5 | 52 | A52V (GCC→GTC) | recN | recombination and repair protein |
| * | NC_000913 | 4,296,060 | 0 | C | T | 20.0% | 124.2 / 25.9 | 75 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 90 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 33 (0.630) | 7 (0.150) | 7/250 | 5.1 | 20.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 26 (0.560) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 4542690 | 43 (0.820) | 7 (0.140) | 7/264 | 5.4 | 15.0% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 39 (0.790) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 1207805 | 35 (0.660) | 6 (0.130) | 6/250 | 5.5 | 17.4% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 26 (0.560) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1096961 = | 69 (1.310) | 3 (0.090) +50 bp |
3/182 | 5.6 | 6.3% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097246 = | NA (NA) | intergenic (+417/+319) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1096961 = | 69 (1.310) | 3 (0.090) +50 bp |
3/182 | 5.6 | 8.0% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097065 = | 38 (0.720) | intergenic (+236/+500) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 805788 = | NA (NA) | 3 (0.080) +45 bp |
3/192 | 5.8 | 6.9% | intergenic (+24/+210) | ybhJ/ybhC | aconitase family protein/acyl‑CoA thioesterase, lipoprotein |
| ? | NC_000913 | = 4153628 | 59 (1.120) | noncoding (282/346 nt) | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP309 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913 | 805788 = | NA (NA) | 3 (0.080) +45 bp |
3/192 | 5.8 | 6.4% | intergenic (+24/+210) | ybhJ/ybhC | aconitase family protein/acyl‑CoA thioesterase, lipoprotein |
| ? | NC_000913 | 805897 = | 64 (1.210) | noncoding (94/178 nt) | REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | NC_000913 | 805788 = | NA (NA) | 3 (0.080) +45 bp |
3/192 | 5.8 | NA | intergenic (+24/+210) | ybhJ/ybhC | aconitase family protein/acyl‑CoA thioesterase, lipoprotein |
| ? | NC_000913 | 805804 = | NA (NA) | noncoding (1/178 nt) | REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | NC_000913 | 4226588 = | 52 (0.990) | 7 (0.130) | 6/280 | 6.1 | 11.8% | coding (2761/3684 nt) | metH | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| ? | NC_000913 | 4226623 = | 53 (1.010) | coding (2796/3684 nt) | metH | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent | |||||
| * | ? | NC_000913 | 4292753 = | 52 (0.990) | 5 (0.100) | 5/270 | 6.4 | 9.3% | coding (1242/1659 nt) | nrfE | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE |
| ? | NC_000913 | 4292776 = | 48 (0.950) | coding (1265/1659 nt) | nrfE | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE | |||||