| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | 1789958 = | 32 (1.010) | 4 (0.130) | 4/276 | 4.1 | 11.7% | noncoding (1789958/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 1789979 = | 30 (0.990) | noncoding (1789979/4641682 nt) | repeat_region | repeat region | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTGATGAGTTTATTGATCGTGCGGCATTTGATGACTGGTTTGCCCGTTATCGGGGGCGTTTGCAACAAGACGAGGTTAGCGATAGTGAGCGTCAGCAACTGATGCAAAGCGTTAACCCCGCTCTGGTATTGCGCAACTGGTTGGCGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_vch_tpiA/1790106‑1789958‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcaaTACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACTCATCACGTAGCGGTGACGCCGCGCTG > NC_000913_3_vch_tpiA/1789979‑1790126 GTGATGAGTTTATTGATCGTGCGGCATTTGATGACTGGTTTGCCCGTTATCGGGGGCGTTTGCAACAAGACGAGGTTAGCGATAGTGAGCGTCAGCAACTGATGCAAAGCGTTAACCCCGCTCTGGTATTGCGCAACTGGTTGGCGCAA < 2:186361/149‑1 AAAGCGTTAACCCCGCTCTGGTATTGCGCAACTGGTTGGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAAC < 1:410178/115‑1 AAAGCGTTAACCCCGCTCTGGTATTGCGCAACTGGTTGGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAAC > 2:410178/1‑115 TGGTATTGCGCAACTGGTTGGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAAC < 1:15919/109‑1 TGGTATTGCGCAACTGGTTGGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAAC > 2:15919/1‑109 ATACCAGGGTGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACTCATCACGTAGCGGTGACGCCGCGCTG < 2:1177/149‑1 GTGATGAGTTTATTGATCGTGCGGCATTTGATGACTGGTTTGCCCGTTATCGGGGGCGTTTGCAACAAGACGAGGTTAGCGATAGTGAGCGTCAGCAACTGATGCAAAGCGTTAACCCCGCTCTGGTATTGCGCAACTGGTTGGCGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_vch_tpiA/1790106‑1789958‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcaaTACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACTCATCACGTAGCGGTGACGCCGCGCTG > NC_000913_3_vch_tpiA/1789979‑1790126 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |