New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	1789958 =	32 (1.010)	4 (0.130)	4/276	4.1	11.7%	noncoding (1789958/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	1789979 =	30 (0.990)					noncoding (1789979/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCCAGTCAGGTGGACGACTGACATAGTCATCATCTCTGTCGCTGAAAGGATTTCGCAACGCCTCATGCAGGCGGTGCAATTCCGTCATATCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACTCATCACGTAGCGGTGACGCCGCGCTG  >  NC_000913_3_vch_tpiA/1789840‑1790126                                                                                                                                            |                                                                                                                                                    cccAGTCAGGTGGACGACTGACATAGTCATCATCTCTGTCGCTGAAAGGATTTCGCAACGCCTCATGCAGGCGGTACAATTCCGTCATATCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCg                                                                                                                                            >  1:79505/1‑149 (MQ=255)        aGGTGGACGACTGACATAGTCCTCATCTCTGTCGCTGAAAGGATTTCGCAACACCTCATGAAGGAAGTGCAATTCCGTCATATAACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAAAGCGGGGTTaa                                                                                                                                     >  1:40346/1‑149 (MQ=255)             gacgacTGACATAGTCATCATCTCTGTCGCTGAAAGGATTTCGCAACGCCTCATGCAGGCGGTGCAATTCCGTCATATCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCtt                                                                                                                                <  1:487129/149‑1 (MQ=255)                    gACATAGTCATCATCTCTGTCGCTGAAAGGATTTCGCAACGCATAATGCAGGCGGTGCAAAGCCGTCATATCACCCTTTTCTGCCGCCTCAATCGCCCGTTGCGCCAACCAGGTGCCCGATCCCAGAGCGGGGGTCACGATTTGCATCa                                                                                                                         >  2:229543/1‑149 (MQ=255)                           tcatcaTCTCTGTCGCTGAAAGGATTTCGCAACGCCTCATGCAGGCGGTGCAATTCCGTCATATCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTg                                                                                                                  >  1:356115/1‑149 (MQ=255)                             atcatcTCTGTCGCTGAAAGGATTTCGCAACGCCTCATGCAGGCGGTGCAATTCCGTCATATCACCCTTTTCTGCCGCTTCACTCGCCCGTTGCGCCAACCAGTTGCGCAATACCACAGCGGGGTTAACGCTTTGCATCAGTAGCTGAc                                                                                                                >  2:347851/1‑149 (MQ=255)                             atcatcTCTGTCGCTGAAAGGATTTCGCAACGCCTCATGCAGGCGGTGCAATTCCGTCATATCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGAc                                                                                                                >  1:257598/1‑149 (MQ=255)                             atcatcTCTGTCGCTGAAAGGATTTCGCAACGCCTCATGCAGGCGGTGCAATTCCGTCATATCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGAc                                                                                                                >  1:35080/1‑149 (MQ=255)                                   tctGTCGCTGAAAGGATTTCGCAACGCCTCATGCAGGCGGTGCAATTCCGTCATATCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGGAATACCAGAGCGGGGTTAACGCTTTGCAt                                                                                                                           >  2:99390/1‑132 (MQ=255)                                   tctGTCGCTGAAAGGATTTCGCAACGCCTCATGCAGGCGGTGCAATTCCGTCATATCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCAt                                                                                                                           <  1:99390/132‑1 (MQ=255)                                             aaaGGATTTCGCAACGCCTCATGCAGGCGTTGCAATTCCGTCATAACACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCATAGCGGGGTTAACGCTTTGCATCAGTTGCTGCCGCTCACTATCGCTAAc                                                                                                >  2:500756/1‑149 (MQ=255)                                                       gCAACTCCTCATGCAGGCGGTGCAATTCCGTCATCTCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCttgt                                                                                      <  2:543453/149‑1 (MQ=255)                                                       gCAACGCCTCATGCAGGCGGTGCAATTCCGTCATATCACCCTCTTCTGCCGCTTCACTCGCCCGTTGCGCCAACCAGTTCCCCACTACCAAAGCGCGTTTAACGCTTGGCCTCAGTTGCGCACGCTCCCGATCGCTAACCTCACCttgt                                                                                      >  2:96725/1‑149 (MQ=255)                                                        cAACGCCACATGCAGGCGGTGCAATTCCGTCATATACCCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCGGACCAGTTGCGCAATACCAGAGCAGGGCTAACTCTTCGAATGAGTTGCTGACACTCACTCACTCAAACCTCgagctctt                                                                                     >  2:110765/1‑142 (MQ=255)                                                                         ggTGCAATTCCCTTATATGCCCCTTCTCTTCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCGGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATaa                                                                    <  1:229543/149‑1 (MQ=255)                                                                          gTGCAATTCCGTCATATCACCCTTTTCTGCCACTTCAATCGCCCGGTGCGCCAACCATTTGCGCAATTCCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGTACACTATCACTCACCTCCTCTTTTCGCAAACGCCCCCCAAAAc                                                                   >  2:459641/1‑149 (MQ=255)                                                                               aTTCCGTCATATCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACAAGTTGCGCAATACCAAAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCa                                                              >  1:424174/1‑149 (MQ=255)                                                                                ttCCGTCATATCACCCTTTTCTGCCGCTTCAATCGCCCGTTTCGCCAACCAGTTGCACAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCaa                                                             >  1:2477/1‑149 (MQ=255)                                                                                   cGTCATATCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAAcc                                                          >  1:231764/1‑149 (MQ=255)                                                                                      cATATCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGt                                                       <  2:35080/149‑1 (MQ=255)                                                                                          tCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGtcatc                                                   <  2:451232/149‑1 (MQ=255)                                                                                            aCCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCACCCAGTTGCGCAATACCAAAGCGGAGATAACGCTTTGCATAAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGGAAACCAGTCATCaa                                                 >  1:159452/1‑149 (MQ=255)                                                                                               cTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATg                                              <  1:496535/149‑1 (MQ=255)                                                                                                ttttCTGCCGCTTCAATCGCCCGTTGCGCCAACCATTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGTTGACGCTCACTATCGCTAATCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGc                                             <  1:429591/149‑1 (MQ=255)                                                                                                     tGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTCCATCAGTTGCTGACGCTCACTATCGCTAACCTCCTCTTGTTGCAAACGCCCCCGATACCGGGACAACCAGTCATACAATGCCGCAc                                        >  2:519008/1‑149 (MQ=255)                                                                                                       ccGCTTCAATCGCCCGTTGCGCCAACCAGCTACACATCACCAGATTGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTTGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGa                                      <  1:12884/149‑1 (MQ=255)                                                                                                       ccGCTGAAATCGTCCGTTGCGCCAATCAGTTGCGCAATACCAGAGTGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACTTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGa                                      <  2:77157/149‑1 (MQ=255)                                                                                                          cTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAAc                                                           >  2:121330/1‑125 (MQ=255)                                                                                                          cTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAAc                                                           <  1:121330/125‑1 (MQ=255)                                                                                                                       ttGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACTCATCAc                      >  2:186361/1‑149 (MQ=255)                                                                                                                                           aTACCAGGGTGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACTCATCACGTAGCGGTGACGCCGCGCtg  <  2:1177/149‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                    CCCAGTCAGGTGGACGACTGACATAGTCATCATCTCTGTCGCTGAAAGGATTTCGCAACGCCTCATGCAGGCGGTGCAATTCCGTCATATCACCCTTTTCTGCCGCTTCAATCGCCCGTTGCGCCAACCAGTTGCGCAATACCAGAGCGGGGTTAACGCTTTGCATCAGTTGCTGACGCTCACTATCGCTAACCTCGTCTTGTTGCAAACGCCCCCGATAACGGGCAAACCAGTCATCAAATGCCGCACGATCAATAAACTCATCACGTAGCGGTGACGCCGCGCTG  >  NC_000913_3_vch_tpiA/1789840‑1790126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.