mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 700,588 | (T)6→5 | coding (1007/1221 nt) | nagC ← | DNA‑binding transcriptional dual regulator NagC |
| JC JC | 1,907,626 | IS5 (–) +4 bp | intergenic (‑35/+632) | yobF ← / ← yebO | DUF2527 domain‑containing protein YobF/uncharacterized protein YebO |
| MC JC | 1,978,503 | Δ776 bp | insB5–insA5 | insB5, insA5 | |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,227,218 | C→T | C18Y (TGC→TAC) | yohF ← | putative oxidoreductase YohF |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| JC | 3,815,859 | Δ82 bp | [rph] | [rph] | |
| RA | 4,181,848 | C→T | R202C (CGT→TGT) | rpoB → | RNA polymerase subunit beta |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423783–3424234 | 3424523–3424238 | 5–741 | 22 [18] | [16] 20 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 374921 = | 142 (1.310) | 38 (0.510) | 9/194 | 2.2 | 27.3% | intergenic (+40/‑538) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377531 = | 104 (1.390) | intergenic (+220/+4) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 375248 = | 153 (1.410) | 31 (0.330) | 11/242 | 2.4 | 20.7% | intergenic (+367/‑211) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377507 = | 105 (1.120) | intergenic (+196/+28) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 1207790 = | 96 (0.880) | 25 (0.260) | 12/248 | 2.3 | 20.1% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 114 (1.190) | intergenic (‑500/‑66) | tfaE/pinE | e14 prophage; putative tail fiber assembly protein TfaE/e14 prophage; site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 109 (1.030) | 48/272 | 0.1 | 100% | intergenic (+253/‑69) | ychE/insH21 | MarC family putative inner membrane protein YchE/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 3428664 | 152 (1.400) | 58 (0.710) +35 bp |
14/210 | 1.5 | 33.8% | noncoding (99/1542 nt) | rrsD | 16S ribosomal RNA |
| ? | NC_000913 | = 4035603 | NA (NA) | noncoding (73/1542 nt) | rrsA | 16S ribosomal RNA | |||||
| * | ? | NC_000913 | 4373287 = | 121 (1.110) | 134 (1.330) | 10/260 | 2.8 | 25.9% | intergenic (+125/+78) | yjeI/yjeJ | DUF4156 domain‑containing lipoprotein YjeI/protein YjeJ |
| ? | NC_000913 | 4374507 = | 656 (6.510) | intergenic (‑273/+122) | yjeJ/epmB | protein YjeJ/lysine 2,3‑aminomutase | |||||