mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,304,649 | 0 | C | T | 42.9% | 4.4 / 12.2 | 15 | intergenic (+256/+459) | eco/mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| * | NC_000913 | 4,296,060 | 0 | C | T | 26.0% | 135.2 / 46.4 | 77 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 17 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 69 (0.760) | 16 (0.200) | 16/244 | 4.5 | 21.8% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 54 (0.680) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1411899 = | 107 (1.190) | 13 (0.180) | 13/224 | 4.8 | 11.5% | coding (50/936 nt) | ttcA | tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| ? | NC_000913 | = 1434958 | 114 (1.560) | pseudogene (51/51 nt) | ttcC | pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 64 (0.710) | 14 (0.180) | 13/244 | 5.3 | 20.3% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 53 (0.660) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 4593324 = | NA (NA) | 7 (0.080) | 7/254 | 7.5 | NA | intergenic (+12/+37) | tsr/lgoT | methyl‑accepting chemotaxis protein I, serine sensor receptor/putative L‑galactonate:H+ symporter |
| ? | NC_000913 | 4593354 = | NA (NA) | intergenic (+42/+7) | tsr/lgoT | methyl‑accepting chemotaxis protein I, serine sensor receptor/putative L‑galactonate:H+ symporter | |||||
| * | ? | NC_000913 | = 3726897 | 170 (1.880) | 7 (0.080) | 7/254 | 7.5 | 4.3% | intergenic (+15/+27) | wecH/yiaA | O‑acetyltransferase for enterobacterial common antigen (ECA)/YiaAB family inner membrane protein, tandem domains |
| ? | NC_000913 | = 3726905 | 154 (1.850) | intergenic (+23/+19) | wecH/yiaA | O‑acetyltransferase for enterobacterial common antigen (ECA)/YiaAB family inner membrane protein, tandem domains | |||||
| * | ? | NC_000913 | 381258 = | NA (NA) | 8 (0.090) | 8/274 | 7.5 | NA | pseudogene (3/417 nt) | yaiX | pseudogene, interrupted by IS2A; hexapeptide transferase superfamily; putative transferase |
| ? | NC_000913 | = 382589 | NA (NA) | noncoding (1330/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 4498181 = | NA (NA) | 15 (0.170) | 8/276 | 7.6 | NA | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 4499512 | NA (NA) | intergenic (+12/+81) | insD1/yjgX | IS2 transposase TnpB/pseudogene fragment | |||||
| * | ? | NC_000913 | 2791000 = | 79 (0.880) | 6 (0.070) | 5/268 | 8.7 | 7.1% | coding (1019/1269 nt) | lhgO | L‑2‑hydroxyglutarate oxidase |
| ? | NC_000913 | 2791027 = | 81 (0.920) | coding (1046/1269 nt) | lhgO | L‑2‑hydroxyglutarate oxidase | |||||
| * | ? | NC_000913 | 318638 = | 218 (2.420) | 5 (0.060) | 4/254 | 9.0 | 2.5% | intergenic (‑71/+38) | rclB/rclA | reactive chlorine species (RCS) stress resistance periplasmic protein/reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family |
| ? | NC_000913 | 318666 = | 183 (2.200) | intergenic (‑99/+10) | rclB/rclA | reactive chlorine species (RCS) stress resistance periplasmic protein/reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family | |||||
| * | ? | NC_000913 | 2557337 = | 64 (0.710) | 4 (0.050) | 4/266 | 9.2 | 6.2% | coding (1343/1362 nt) | eutB | ethanolamine ammonia‑lyase, large subunit, heavy chain |
| ? | NC_000913 | 2557361 = | 59 (0.680) | coding (1319/1362 nt) | eutB | ethanolamine ammonia‑lyase, large subunit, heavy chain | |||||