mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 44.0% | 12.5 / 28.0 | 25 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,591,500 | 0 | A | G | 26.7% | 43.7 / 17.3 | 30 | intergenic (‑221/‑157) | yjiY/tsr | putative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor |
| * | NC_000913 | 4,591,501 | 0 | T | A | 26.7% | 45.5 / 18.7 | 30 | intergenic (‑222/‑156) | yjiY/tsr | putative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor |
| * | NC_000913 | 4,591,498 | 0 | T | A | 25.0% | 50.0 / 18.2 | 32 | intergenic (‑219/‑159) | yjiY/tsr | putative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor |
| * | NC_000913 | 4,591,499 | 0 | C | T | 25.0% | 53.9 / 16.2 | 32 | intergenic (‑220/‑158) | yjiY/tsr | putative transporter/methyl‑accepting chemotaxis protein I, serine sensor receptor |
| * | NC_000913 | 4,549,866 | 0 | T | G | 22.9% | 67.2 / 19.5 | 35 | intergenic (+156/+87) | fimH/gntP | minor component of type 1 fimbriae/fructuronate transporter |
| Marginal new junction evidence (lowest skew 10 of 42 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3621371 = | NA (NA) | 8 (0.250) | 6/242 | 3.2 | 100% | coding (2180/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3621377 = | 0 (0.000) | coding (2186/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 2906594 = | 30 (0.880) | 5 (0.160) | 5/230 | 3.4 | 16.2% | intergenic (+11/+49) | ygcG/eno | TPM domain protein, putative phosphatase/enolase |
| ? | NC_000913 | 2906624 = | 25 (0.810) | intergenic (+41/+19) | ygcG/eno | TPM domain protein, putative phosphatase/enolase | |||||
| * | ? | NC_000913 | = 3596428 | 37 (1.080) | 5 (0.150) | 5/242 | 3.5 | 12.5% | intergenic (‑25/+23) | livH/livK | branched‑chain amino acid ABC transporter permease/leucine transporter subunit |
| ? | NC_000913 | = 3596435 | 35 (1.080) | intergenic (‑32/+16) | livH/livK | branched‑chain amino acid ABC transporter permease/leucine transporter subunit | |||||
| * | ? | NC_000913 | 2077179 = | 35 (1.020) | 5 (0.160) | 5/240 | 3.5 | 15.0% | coding (68/369 nt) | cbeA | CP4‑44 prophage; cytoskeleton bundling‑enhancing factor A; CbtA antitoxin |
| ? | NC_000913 | 2077221 = | 24 (0.750) | coding (110/369 nt) | cbeA | CP4‑44 prophage; cytoskeleton bundling‑enhancing factor A; CbtA antitoxin | |||||
| * | ? | NC_000913 | = 1428264 | NA (NA) | 14 (0.430) | 5/244 | 3.6 | 100% | noncoding (531/1196 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2066866 | 0 (0.000) | noncoding (488/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1396531 = | NA (NA) | 14 (0.430) | 5/244 | 3.6 | NA | noncoding (488/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1428264 | NA (NA) | noncoding (531/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 3635910 = | 41 (1.200) | 4 (0.130) | 4/232 | 3.8 | 9.3% | intergenic (+17/+298) | yhiM/yhiN | acid resistance protein, inner membrane/putative oxidoreductase |
| ? | NC_000913 | 3635946 = | 41 (1.320) | intergenic (+53/+262) | yhiM/yhiN | acid resistance protein, inner membrane/putative oxidoreductase | |||||
| * | ? | NC_000913 | 4011673 = | 37 (1.080) | 4 (0.120) | 4/242 | 3.9 | 11.1% | coding (598/900 nt) | yigM | putative inner membrane EamA‑like transporter |
| ? | NC_000913 | 4011714 = | 29 (0.900) | coding (639/900 nt) | yigM | putative inner membrane EamA‑like transporter | |||||
| * | ? | NC_000913 | = 3442513 | 45 (1.310) | 4 (0.120) | 4/242 | 3.9 | 8.6% | intergenic (‑42/+105) | rpsM/rpmJ | 30S ribosomal subunit protein S13/50S ribosomal subunit protein L36 |
| ? | NC_000913 | = 3442518 | 42 (1.300) | intergenic (‑47/+100) | rpsM/rpmJ | 30S ribosomal subunit protein S13/50S ribosomal subunit protein L36 | |||||
| * | ? | NC_000913 | 2904902 = | 34 (0.990) | 4 (0.130) | 4/238 | 3.9 | 11.7% | coding (517/672 nt) | queE | 7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| ? | NC_000913 | 2904942 = | 29 (0.910) | coding (477/672 nt) | queE | 7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis | |||||