| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | = 3789351 | 303 (1.280) | 4 (0.020) +TGTAA |
4/236 | NT | 1.3% | intergenic (‑30/+94) | licB/EO946_RS19525 | PTS lichenan transporter subunit IIB/BglG family transcription antiterminator |
| ? | NZ_CP034943 | 3789352 = | 304 (1.250) | intergenic (‑31/+93) | licB/EO946_RS19525 | PTS lichenan transporter subunit IIB/BglG family transcription antiterminator | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAACTGCCCAAATGGTATAGTCTTTTCCTTGTTCTTGCGCACTTTTCTCCATCTTGCTCACCAATAAGCTAGTAGACATGCCTGCTGCACAAACGAGTAATATATTCATGTAAAAGACCCCCTAGATTTTGATCAATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP034943/3789213‑3789351‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTCCTGCTGTTGATATCATCATATTATGAAATCGCTTTCATAAACACTCAAGGTTTTTCCGCATGAAACGGAAAAAAGGTATATACAGGCTGTCAGCTCAGCATTTTTTGGTCAAACA > NZ_CP034943/3789352‑3789470 ||||| AAACTGCCCAAATGGTATAGTCTTTTCCTTGTTCTTGCGCACTTTTCTCCATCTTGCTCACCAATAAGCTAGTAGACATGCCTGCTGCACAAACGAGTCATATATTCATGTAAAAGACCCCCTAGATTTTGATCAATTTT > 1:2576821/1‑140AAACTGCCCAAATGGTATAGTCTTTTCCTTGTTCTTGCGCACTTTTCTCCATCTTGCTCACCAATAAGCTAGTAGACATGCCTGCTGCACAAACGAGTAATATATTCATGTAAAAGACCCCCTAGATTTTGATCAATTTT > 1:2684360/1‑140AAACTGCCCAAATGGTATAGTCTTTTCCTTGTTCTTGCGCACTTTTCTCCATCTTGCTCACCAATAAGCTAGTAGACATGCCTGCTGCACAAACGAGTAATATATTCATGTAAAAGACCCCCTAGATTTTGATCAATTTT > 1:2814426/1‑140 AACTGCCCAAATGGTATAGTCTTTTCCTTGTTCTTGCGCACTTTTCTCCCTCTTGCTCACCAATAAGCTAGTAGACATGCCTGCTGCACAAACGAGTAATATAGTCATGTAAAAGACCCCCTAGATTTTGATCAATTTTG < 2:290909/140‑1 AACTGCCCAAATGGTATAGTCTTTTCCTTGTTCTTGCGCACTTTTCTCCATCTTGCTCACCAATAAGCTAGTAGACATGCCTGCTGCACAAACGAGTAATATATTCATGTAAAAGACCCCCTAGATTTTGATCAATTTTG > 1:1233740/1‑140 AACTGCCCAAATGGTATAGTCTTTTCCTTGTTCTTGCGCACTTTTCTCCATCTTGCTCACCAATAAGCTAGTAGACATGCCTGCTGCACAAACGAGTAATATATTCATGTAAAAGACCCCCTAGATTTTGATCAATTTTG > 1:1534452/1‑140 AACTGCCCAAATGGTATAGTCTTTTCCTTGTTCTTGCGCACTTTTCTCCATCTTGCTCACCAATAAGCTAGTAGACATGCCTGCTGCACAAACGAGTAATATATTCATGTAAAAGACCCCCTAGATTTTGATCAATTTTG > 1:1650606/1‑140 AACTGCCCAAATGGTATAGTCTTTTCCTTGTTCTTGCGCACTTTTCTCCATCTTGCTCACCAATAAGCTAGTAGACATGCCTGCTGCACAAACGAGTAATATATTCATGTAAAAGACCCCCTAGATTTTGATCAATTTTG > 1:2692421/1‑140 AACTGCCCAAATGGTATAGTCTTTTCCTTGTTCTTGCGCACTTTTCTCCATCTTGCTCACCAATAAGCTAGTAGACATGCCTGCTGCACAAACGAGTAATATATTCATGTAAAAGACCCCCTAGATTTTGATCAATTTTG > 1:3747606/1‑140 AACTGCCCAAATGGTATAGTCTTTTCCTTGTTCTTGCGCACTTTTCTCCATCTTGCTCACCAATAAGCTAGTAGACATGCCTGCTGCACAAACGAGTAATATATTCATGTAAAAGACCCCCTAGATTTTGATCAATTTTG < 2:1770303/140‑1 CTGCACAAACGAGTAATATATTCATGTAAAAGACCCCCTAGAGTTTGATCAATTTTGTAATGTCCTGCTGTTGCTATCATCATATTATGAAATCGCTTTCATA > 1:4016927/1‑103 CTGCACAAACGAGTAATATATTCATGTAAAAGACCCCCTAGAGTTTGATCAATTTTGTAATGTCCTGCTGTTGCTATCATCATATTATGAAATCGCTTTCATA < 2:4016927/103‑1 TTCATGTAAAAGACCCCCTAGAGTTTGATCAATTTTGTAATGTCCTGCTGTTGCTATCATCATATTATGAAATCGCTTTCATAAACACTCAGGGTTTTTCCGCAGGCAACGGAAAAAAGGTATATACAGGCTGTCAGCTC > 1:3507193/1‑140 AGAGTTTGATCAATTTTGTAATGTCCTGCTGTTGCTATCATCATATTATGAAATCGCTTTCATAAACACTCAGGGTTTTTCCGCAGGCAACGGAAAAAAGGTATATACAGGCTGTCAGCTCAGCATTTTTTGGTCAAACA < 2:3507193/140‑1 ||||| AAACTGCCCAAATGGTATAGTCTTTTCCTTGTTCTTGCGCACTTTTCTCCATCTTGCTCACCAATAAGCTAGTAGACATGCCTGCTGCACAAACGAGTAATATATTCATGTAAAAGACCCCCTAGATTTTGATCAATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP034943/3789213‑3789351‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTCCTGCTGTTGATATCATCATATTATGAAATCGCTTTCATAAACACTCAAGGTTTTTCCGCATGAAACGGAAAAAAGGTATATACAGGCTGTCAGCTCAGCATTTTTTGGTCAAACA > NZ_CP034943/3789352‑3789470 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |