mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 44,301 | (T)9→8 | intergenic (+132/‑359) | oprD_1 → / → czcR_2 | Porin D/Transcriptional activator protein CzcR |
| RA | 120,983 | (T)9→8 | intergenic (+280/+92) | polA → / ← engB | DNA polymerase I/putative GTP‑binding protein EngB |
| RA | 179,484 | T→C | C316R (TGC→CGC) | CJ019_00182 → | hypothetical protein |
| JC | 4,257,335 | +GCGGCCGC | intergenic (‑281/+7) | CJ019_03991 ← / ← CJ019_03994 | putative ABC transporter ATP‑binding protein/hypothetical protein |
| RA | 4,759,510 | G→A | intergenic (+125/‑15) | fpvA_3 → / → ligM_KToptimized | Ferripyoverdine receptor/sequence generated by OPTIMIZER for KT2440 |
| RA | 5,386,500 | C→A | intergenic (‑509/+1142) | CJ019_05070 ← / ← nptII | hypothetical protein/neomycin phosphotransferase |
| RA | 5,386,503 | C→G | intergenic (‑512/+1139) | CJ019_05070 ← / ← nptII | hypothetical protein/neomycin phosphotransferase |
| RA | 5,386,506 | 1 bp→GT | intergenic (‑515/+1136) | CJ019_05070 ← / ← nptII | hypothetical protein/neomycin phosphotransferase |
| RA | 5,386,507 | +C | intergenic (‑516/+1135) | CJ019_05070 ← / ← nptII | hypothetical protein/neomycin phosphotransferase |
| RA | 5,386,510 | 2 bp→TA | intergenic (‑519/+1131) | CJ019_05070 ← / ← nptII | hypothetical protein/neomycin phosphotransferase |
| RA | 5,386,513 | +AA | intergenic (‑522/+1129) | CJ019_05070 ← / ← nptII | hypothetical protein/neomycin phosphotransferase |
| RA | 5,386,514 | T→C | intergenic (‑523/+1128) | CJ019_05070 ← / ← nptII | hypothetical protein/neomycin phosphotransferase |
| RA | 5,386,517 | G→C | intergenic (‑526/+1125) | CJ019_05070 ← / ← nptII | hypothetical protein/neomycin phosphotransferase |
| RA | 5,386,519 | G→A | intergenic (‑528/+1123) | CJ019_05070 ← / ← nptII | hypothetical protein/neomycin phosphotransferase |
| RA | 5,386,811 | C→T | intergenic (‑820/+831) | CJ019_05070 ← / ← nptII | hypothetical protein/neomycin phosphotransferase |
| MC JC | 5,390,191 | Δ10 bp | coding (285‑294/1666 nt) | ligH → | 10‑formyltetrahydrofolate synthetase |
| JC | 5,391,707 | +54 bp | intergenic (+124/‑1253) | ligH → / → CJ019_05072 | 10‑formyltetrahydrofolate synthetase/hypothetical protein |
| RA | 5,760,598 | (A)6→5 | coding (781/834 nt) | CJ019_05400 → | hypothetical protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | ACB143 | 517175 | 517317 | 143 | 19 [17] | [18] 19 | [tyrS] | [tyrS] |
| * | * | ÷ | ACB143 | 674245 | 674407 | 163 | 24 [16] | [18] 19 | [nimR_1]–[mcpH_2] | [nimR_1],[mcpH_2] |
| * | * | ÷ | ACB143 | 1585595 | 1585704 | 110 | 20 [18] | [18] 19 | CJ019_01493 | hypothetical protein |
| * | * | ÷ | ACB143 | 1914560 | 1914665 | 106 | 23 [12] | [18] 19 | [ppsC_1]–[CJ019_01830] | [ppsC_1],[CJ019_01830] |
| * | * | ÷ | ACB143 | 1923378 | 1923538 | 161 | 22 [18] | [18] 19 | [apeB] | [apeB] |
| * | * | ÷ | ACB143 | 2191013 | 2191045 | 33 | 22 [11] | [0] 114 | PP_RS10045 | LysR family transcriptional regulator |
| * | * | ÷ | ACB143 | 2288843 | 2288910 | 68 | 20 [18] | [18] 22 | CJ019_02171/CJ019_02172 | hypothetical protein/hypothetical protein |
| * | * | ÷ | ACB143 | 3046202 | 3046330 | 129 | 19 [18] | [14] 20 | [rcsC_5]–[degU_2] | [rcsC_5],[degU_2] |
| * | * | ÷ | ACB143 | 3769377 | 3769489 | 113 | 19 [18] | [18] 20 | CJ019_03581/CJ019_03582 | hypothetical protein/hypothetical protein |
| * | * | ÷ | ACB143 | 4163760 | 4163868 | 109 | 20 [17] | [18] 19 | katG/leuO_2 | Catalase‑peroxidase/HTH‑type transcriptional regulator LeuO |
| * | * | ÷ | ACB143 | 4344738 | 4344849 | 112 | 19 [18] | [18] 19 | nmoA | Nitronate monooxygenase |
| * | * | ÷ | ACB143 | 4521553 | 4521662 | 110 | 20 [18] | [16] 21 | [CJ019_04289] | [CJ019_04289] |
| * | * | ÷ | ACB143 | 4732367 | 4732526 | 160 | 20 [18] | [16] 20 | [CJ019_04468] | [CJ019_04468] |
| * | * | ÷ | ACB143 | 4801226 | 4801658 | 433 | 22 [17] | [17] 20 | CJ019_04509/dsbD_2 | hypothetical protein/Thiol:disulfide interchange protein DsbD |
| * | * | ÷ | ACB143 | 4845708 | 4845836 | 129 | 20 [18] | [18] 21 | recR/ybaB | Recombination protein RecR/Nucleoid‑associated protein YbaB |
| * | * | ÷ | ACB143 | 4944203 | 4944340 | 138 | 19 [18] | [18] 19 | [CJ019_04642] | [CJ019_04642] |
| * | * | ÷ | ACB143 | 5192923 | 5193042 | 120 | 20 [18] | [17] 19 | [gltR_4]–[CJ019_04888] | [gltR_4],[CJ019_04888] |
| * | * | ÷ | ACB143 | 5194889 | 5195009 | 121 | 20 [15] | [17] 19 | CJ019_04890/dapb1 | hypothetical protein/Dipeptidyl aminopeptidase BI |
| * | * | ÷ | ACB143 | 5482266 | 5482414 | 149 | 19 [18] | [17] 19 | [purH] | [purH] |
| * | * | ÷ | ACB143 | 5678562 | 5678668 | 107 | 19 [17] | [17] 21 | CJ019_05328/CJ019_05329 | hypothetical protein/hypothetical protein |
| * | * | ÷ | ACB143 | 5900288 | 5900417 | 130 | 19 [18] | [18] 22 | [CJ019_05521] | [CJ019_05521] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB143 | 2191046 = | 0 (0.000) | 104 (2.070) +TAAGAGATATTTTCAG |
58/228 | 0.0 | 100% | intergenic (‑1/‑313) | PP_RS10045/purU_3 | LysR family transcriptional regulator/Formyltetrahydrofolate deformylase |
| ? | ACB143 | = 2191046 | NA (NA) | intergenic (‑1/‑313) | PP_RS10045/purU_3 | LysR family transcriptional regulator/Formyltetrahydrofolate deformylase | |||||