mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 23 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 951207 = | 112 (1.510) | 5 (0.070) | 5/270 | 9.5 | 4.5% | intergenic (‑127/+65) | pflA/pflB | pyruvate formate‑lyase 1‑activating enzyme, [formate‑C‑acetyltransferase 1]‑activating enzyme, PFL activase/formate C‑acetyltransferase 1, anaerobic, pyruvate formate‑lyase 1 |
| ? | NC_000913 | 951233 = | 104 (1.470) | intergenic (‑153/+39) | pflA/pflB | pyruvate formate‑lyase 1‑activating enzyme, [formate‑C‑acetyltransferase 1]‑activating enzyme, PFL activase/formate C‑acetyltransferase 1, anaerobic, pyruvate formate‑lyase 1 | |||||
| * | ? | NC_000913 | 3296997 = | NA (NA) | 5 (0.070) | 4/268 | 10.1 | NA | noncoding (1/84 nt) | REP240 (repetitive extragenic palindromic) element, contains 2 REP sequences | REP240 (repetitive extragenic palindromic) element, contains 2 REP sequences |
| ? | NC_000913 | 3297030 = | NA (NA) | noncoding (34/84 nt) | REP240 (repetitive extragenic palindromic) element, contains 2 REP sequences | REP240 (repetitive extragenic palindromic) element, contains 2 REP sequences | |||||
| * | ? | NC_000913 | 1097007 = | 84 (1.140) | 5 (0.070) | 4/276 | 10.3 | 5.7% | intergenic (+178/+558) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097172 = | NA (NA) | intergenic (+343/+393) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1096988 = | 83 (1.120) | 5 (0.070) | 4/276 | 10.3 | 5.8% | intergenic (+159/+577) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097010 = | 82 (1.130) | intergenic (+181/+555) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 3905649 | 103 (1.390) | 3 (0.050) | 3/252 | 10.4 | 3.1% | intergenic (‑53/+81) | bglF/bglG | fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component/transcriptional antiterminator of the bgl operon |
| ? | NC_000913 | = 3905671 | 98 (1.480) | intergenic (‑75/+59) | bglF/bglG | fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component/transcriptional antiterminator of the bgl operon | |||||
| * | ? | NC_000913 | = 3876110 | 75 (1.010) | 3 (0.040) | 3/262 | 10.7 | 4.3% | intergenic (+17/+29) | yidX/yidA | putative lipoprotein/sugar phosphate phosphatase |
| ? | NC_000913 | = 3876121 | 65 (0.950) | intergenic (+28/+18) | yidX/yidA | putative lipoprotein/sugar phosphate phosphatase | |||||
| * | ? | NC_000913 | 3736655 = | 96 (1.300) | 3 (0.040) | 3/262 | 10.7 | 3.2% | coding (522/825 nt) | bax | putative glucosaminidase |
| ? | NC_000913 | = 3736651 | 91 (1.320) | coding (526/825 nt) | bax | putative glucosaminidase | |||||
| * | ? | NC_000913 | = 1104930 | 114 (1.540) | 3 (0.040) | 3/264 | 10.8 | 2.7% | intergenic (+28/‑31) | csgA/csgC | curlin subunit, amyloid curli fibers, cryptic/curli assembly protein |
| ? | NC_000913 | = 1104934 | 107 (1.540) | intergenic (+32/‑27) | csgA/csgC | curlin subunit, amyloid curli fibers, cryptic/curli assembly protein | |||||
| * | ? | NC_000913 | = 609415 | 81 (1.090) | 3 (0.040) | 3/266 | 10.8 | 3.8% | intergenic (+238/+44) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex |
| ? | NC_000913 | = 609431 | 75 (1.070) | intergenic (+254/+28) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex | |||||
| * | ? | NC_000913 | 4332953 = | 78 (1.050) | 3 (0.040) | 3/270 | 10.9 | 3.9% | coding (321/1092 nt) | basS | sensory histidine kinase in two‑component regulatory system with BasR |
| ? | NC_000913 | 4333017 = | 73 (1.030) | coding (257/1092 nt) | basS | sensory histidine kinase in two‑component regulatory system with BasR | |||||