breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal new junction evidence (sorted from low to high skew)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2460492 =130 (1.540)5 (0.060) 3/246 NT 3.9% coding (783/900 nt) natA_2 ABC transporter ATP‑binding protein NatA
?USA300TCH1516_ALE 2460521 = 123 (1.540)coding (754/900 nt) natA_2 ABC transporter ATP‑binding protein NatA
* ? USA300TCH1516_ALE 1965737 =103 (1.220)3 (0.040) 3/246 NT 2.9% coding (71/924 nt) hemH Ferrochelatase
?USA300TCH1516_ALE 1965782 = 101 (1.260)coding (26/924 nt) hemH Ferrochelatase
* ? USA300TCH1516_ALE = 145402960 (0.710)3 (0.040) 3/236 NT 4.9% intergenic (‑108/+176) odhA/arlS 2‑oxoglutarate dehydrogenase E1 component/Signal transduction histidine‑protein kinase ArlS
?USA300TCH1516_ALE = 1454035 62 (0.810)intergenic (‑114/+170) odhA/arlS 2‑oxoglutarate dehydrogenase E1 component/Signal transduction histidine‑protein kinase ArlS
* ? USA300TCH1516_ALE 407090 =103 (1.220)4 (0.050) 4/236 NT 4.5% intergenic (+5/+78) USA300HOU_RS01880/kynB putative acetyl‑CoA acyltransferase/Kynurenine formamidase
?USA300TCH1516_ALE 407140 = 77 (1.000)intergenic (+55/+28) USA300HOU_RS01880/kynB putative acetyl‑CoA acyltransferase/Kynurenine formamidase
* ? NC_012417 = 29371703 (1.030)5 (0.000) 5/250 NT 0.31% intergenic (‑263/–) USA300HOU_RS14900/– hypothetical protein/–
?NC_012417 = 2949 1534 (0.960)intergenic (‑275/–) USA300HOU_RS14900/– hypothetical protein/–
* ? NC_012417 1947 =1725 (1.040)6 (0.000) 5/244 NT 0.41% intergenic (+180/+146) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein
?NC_012417 2073 = 1284 (0.830)intergenic (+306/+20) USA300HOU_RS14895/USA300HOU_RS14900 hypothetical protein/hypothetical protein