New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2497916	143 (1.110)	3 (0.030)	3/232	NT	2.1%	intergenic (+21/+65)	corA/scrA	MIT family metal ion transporter CorA/PTS family sucrose porter component IIBC
	?	CP000730	= 2497963	147 (1.250)					intergenic (+68/+18)	corA/scrA	MIT family metal ion transporter CorA/PTS family sucrose porter component IIBC
Rejected: Frequency below/above cutoff threshold.

TTTCTTCGGTATGAATGTGCCGTTGCCAATTGATGACCATAGTTATATATCTTGGATTATTGTGGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2497766‑2497916 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggtatgacagTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATACCTTTTAATTTAGTTATAATTTCTGTTTACGCCATAAGAAAATACTAACAATTACGACAAGAATTAATGAAATACCTACCACAAT  <  CP000730/2497963‑2497824                                                                                                                                                                                                                                                                                                     TTTCTTCGGTATGAATGTGCCGTTGCCAATTGATGACCATAGTTATATATCTTGGATTATTGTGGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAA                                                                                                                                                        <  2:1204654/141‑1    CTTCGGTATGAATGTGCCGTTGCCAATTGATGACCATAGTTATATATCTTGGATTATTGTGGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGT                                                                                                                                                     >  2:1539496/1‑141     TTCGGTATGAATGTGCCGTTGCCAATTGATGACCATAGTTATATATCTTGGATTATTGTGGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTA                                                                                                                                                    >  1:225256/1‑141     TTCGGTATGAATGTGCCGTTGCCAATTGATGACCATAGTTATATATCTTGGATTATTGTGGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTA                                                                                                                                                    >  1:225101/1‑141        GGTATGAATGTGCCTTTGCCAATTGATGATCATAGTTATATATCTTTGATTATTGTGGTATGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGA                                                                                                                                                 <  2:1567856/141‑1        GGTATGAATGTGCCGTTGCCAATTGATGACCATAGTTATATATCTTGGATTATTGTGGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGA                                                                                                                                                 <  1:684646/141‑1        GGTATGAATGTGCCGTTGCCAATTGATGACCATAGTTATATATCTTGGATTATTGTGGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGA                                                                                                                                                 >  1:935291/1‑141        GGTATGAATGTGCCGTTGCCAATTGATGACCATAGTTATATATCTTGGATTATTGTGGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGA                                                                                                                                                 <  1:10083/141‑1        GGTATGAATGTGCCGTTGCCAATTGATGACCATAGTTATATATCTTGGATTATTGTGGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGA                                                                                                                                                 >  1:1053921/1‑141          TATGAATGTGCCGTTGCCAATTGATGACCATAGTTATATATCTTGGATTATTGTGGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACA                                                                                                                                               >  1:1345557/1‑141                                                      GGATTATTGTGGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTT                                                                                                   <  1:357179/141‑1                                                            TTGTGGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCT                                                                                             <  1:56489/141‑1                                                                      TATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATACCTT                                                                                   <  2:388910/141‑1                                                                                                                                        taAAAAGNAATGATAGTAACCAAAGTATCAATCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATAACTTTTAATTTAGATACCATCTCTATTTACGCCATAAGAAACTACTAACAATTACGACAAGAATCAATGA                 <  2:1242013/139‑1                                                                                                                                             AGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATACCTTTTAATTTAGTTATAATTTCTGTTTACGCCATAAGAAAATACTAACAATTACGACAAGAATTAATGAAATAC            <  2:755947/141‑1                                                                                                                                             AGGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATACCTTTTAATTTAGTTATAATTTCTGTTTACGCCATAAGAAAATACTAACAATTACGACAAGAATTAATGAAATAC            <  1:210863/141‑1                                                                                                                                              GGTATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATACCTTTTAATTTAGTTATAATTTCTGTTTACGCCATAAGAAAATACTAACAATTACGACAAGAATTAATGAAATACC           <  2:899099/141‑1                                                                                                                                                TATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATACCTTTTAATTTAGTTATAATTTCTGTTTACGCCATAAGAAAATACTAACAATTACGACAAGAATTAATGAAATACCTA         >  1:650494/1‑141                                                                                                                                                 ATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATACCTTTTAATTTAGTTATAATTTCTGTTTACGCCATAAGAAAATACTAACAATTACGACAAGAATTAATGAAATACCTAC        >  1:1379649/1‑141                                                                                                                                                 ATGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATACCTTTTAATTTAGTTATAATTTCTGTTTACGCCATAAGAAAATACTAACAATTACGACAAGAATTAATGAAATACCTAC        >  2:1543799/1‑141                                                                                                                                                  TGACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATACCTTTTAATTTAGTTATAATTTCTGTTTACGCCATAAGAAAATACTAACAATTACGACAAGAATTAATGAAATACCTACC       <  2:957548/141‑1                                                                                                                                                   GACAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATACCTTTTAATTTAGTTATAATTTCTGTTTACGCCATAAGAAAATACTAACAATTACGACAAGAATTAATGAAATACCTACCA      >  1:402564/1‑141                                                                                                                                                     CAGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATACCTTTTAATTTAGTTATAATTTCTGTTTACGCCATAAGAAAATACTAACAATTACGACAAGAATTAATGAAATACCTACCACA    <  1:85544/141‑1                                                                                                                                                      AGTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATACCTTTTAATTTAGTTATAATTTCTGTTTACGCCATAAGAAAATACTAACAATTACGACAAGAATTAATGAAATACCTACCACAA   <  1:37975/141‑1                                                                                                                                                       GTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATACCTTTTAATTTAGTTATAATTTCTGTTTACGCCATAAGAAAATACTAACAATTACGACAAGAATTAATGAAATACCTACCACAAT  <  2:1194244/141‑1                                                                                                                                                       GTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATACCTTTTAATTTAGTTATAATTTCTGTTTACGCCATAAGAAAATACTAACAATTACGACAAGAATTAATGAAATACCTACCACAAT  <  1:1049579/141‑1                                                                                                                                                       GTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATACCTTTTAATTTAGTTATAATTTCTGTTTACGCCATAAGAAAATACTAACAATTACGACAAGAATTAATGAAATACCTACCACAAT  <  1:761628/141‑1                                                                                                                                                                                                                                                                                                     TTTCTTCGGTATGAATGTGCCGTTGCCAATTGATGACCATAGTTATATATCTTGGATTATTGTGGTAGGTATTTCATTAATTCTTGTCGTAATTGTTAGTATTTTCTTATGGCGTAAACAGAAATTATAACTAAATTAAAAGGTATGACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2497766‑2497916 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggtatgacagTAATCAAAGTATCAGTCATTGCAAATGCAATAGGATGAAACTTTAAGCTGTCATACCTTTTAATTTAGTTATAATTTCTGTTTACGCCATAAGAAAATACTAACAATTACGACAAGAATTAATGAAATACCTACCACAAT  <  CP000730/2497963‑2497824

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.