New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2840863	145 (1.120)	3 (0.020)	3/238	NT	2.1%	intergenic (‑184/‑7)	hisZ/USA300HOU_2682	possible ATP phosphoribosyltransferase regulatory subunit/hypothetical protein
	?	CP000730	= 2840932	146 (1.210)					coding (63/108 nt)	USA300HOU_2682	hypothetical protein
Rejected: Frequency below/above cutoff threshold.

TTGGTATTTTCGTTGTTTGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2840719‑2840863 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaggcaagGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGGCACAAATGTCTTGCCTTTTTTATTTTAAAAAATTTTAAAATCAATACACCGAATTTTCTGAAAAAGGTTGTAATGTATTG  <  CP000730/2840932‑2840793                                                                                                                                                                                                                                                                                               TTGGTATTTTCGTTGTTTGCTTTACTTCTCTACCAAACTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTTATTTTAAAATAAAAAAAAAAAAAAAAGG                                                                                                                                                  <  2:572432/141‑1  TGGTATTTTCGTTGTTTGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGC                                                                                                                                                 <  1:179433/141‑1    GTATTTTCGTTGTTTGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAA                                                                                                                                               <  1:816092/141‑1    GTATTTTCGTTGTTTGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATAAAATAAAATAAAAAAGGCAA                                                                                                                                               <  2:1220838/141‑1                                                ATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGG                                                                                                   >  1:1392106/1‑141                                                                                CATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGGCACAAATGTCTTGCC                                                                   <  2:1392106/141‑1                                                                                              TCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGACACAAATGTCTTGCCTTTTTTATTTTAAA                                                     <  2:1184620/141‑1                                                                                                                                        agAAGGCAAGGACAATATGTGCAAGAAGGACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGGCACAAATGTCTTGCCTTTTTTATTTTAAAAAATTTTAAAATCAATACACCGAATTTTCTGAAAAAGGTTGT           <  1:723728/139‑1                                                                                                                                          AAGGCAAGGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGGCACAAATGTCTTGCCTTTTTTATTTTAAAAAATTTTAAAATCAATACACCGAATTTTCTGAAAAAGGTTGTAA         >  2:334846/1‑141                                                                                                                                             GCAAGGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGGCACAAATGTCTTGCCTTTTTTATTTTAAAAAATTTTAAAATCAATACACCGAATTTTCTGAAAAAGGTTGTAATGT      <  2:1193774/141‑1                                                                                                                                               AAGGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGGCACAAATGTCTTGCCTTTTTTATTTTAAAAAATTTTAAAATCAATACACCGAATTTTCTGAAAAAGGTTGTAATGTAT    <  1:206597/141‑1                                                                                                                                               AAGGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGGCACAAATGTCTTGCCTTTTTTATTTTAAAAAATTTTAAAATCAATACACCGAATTTTCTGAAAAAGGTTGTAATGTAT    <  2:1615046/141‑1                                                                                                                                               AAGGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGGAAAAAATGTCTTGACTTTTTTATTTTAAAAAATTTTAAAATCAATACAGCGAATTTTCTGAAAAAGGTTGTAAaaaaa    <  2:542288/141‑6                                                                                                                                                AGGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGGCACAAATGTCTTGCCTTTTTTATTTTAAAAAATTTTAAAATCAATACACCGAATTTTCTGAAAAAGGTTGTAATGTATT   >  2:1428231/1‑141                                                                                                                                                AGGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGGCACAAATGTCTTGCCTTTTTTATTTTAAAAAATTTTAAAATCAATACACCGAATTTTCTGAAAAAGGTTGTAATGTATT   <  2:829046/141‑1                                                                                                                                                AGGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGGCACAAATGTCTTGCCTTTTTTATTTTAAAAAATTTTAAAATCAATACACCGAATTTTCTGAAAAAGGTTGTAATGTATT   <  1:1546091/141‑1                                                                                                                                                 GGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGCTTAAGCATTTTTATAGGCACAAATGTCTTGCCTTTTTTATTTTAAAAAATTTTAAAATCAATACACCGAATTTTCTGAAAAAGGTTGTAATGTATTG  <  1:1305340/141‑1                                                                                                                                                                                                                                                                                               TTGGTATTTTCGTTGTTTGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2840719‑2840863 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaggcaagGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGGCACAAATGTCTTGCCTTTTTTATTTTAAAAAATTTTAAAATCAATACACCGAATTTTCTGAAAAAGGTTGTAATGTATTG  <  CP000730/2840932‑2840793

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.