New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 2840863145 (1.120)3 (0.020) 3/238 NT 2.1% intergenic (‑184/‑7) hisZ/USA300HOU_2682 possible ATP phosphoribosyltransferase regulatory subunit/hypothetical protein
?CP000730 = 2840932 146 (1.210)coding (63/108 nt) USA300HOU_2682 hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 183 total aligned reads displayed.

ATTTTCGTTGTTTGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGAT  >  CP000730/2840724‑2841003
                                                                                                                                           |                                                                                                                                            
 ttttCGTTGTTTGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGAc                                                                                                                                            <  1:1627248/141‑1 (MQ=255)
    tCGTTGTTTGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACAtt                                                                                                                                         >  2:201493/1‑141 (MQ=255)
       ttgttTGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTtgt                                                                                                                                      >  1:335133/1‑141 (MQ=255)
        tgttTGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTtgtg                                                                                                                                     >  2:635035/1‑141 (MQ=255)
          tttGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGcc                                                                                                                                   <  1:556363/141‑1 (MQ=255)
          tttGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTAATAAAATAAAAAAGGCAAGACATTTGTGcc                                                                                                                                   <  2:404446/141‑1 (MQ=255)
             gCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCtat                                                                                                                                <  2:1158762/141‑1 (MQ=255)
               tttACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATaa                                                                                                                              >  2:1135757/1‑141 (MQ=255)
                ttACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAATAAGGCAAGACATTTGTGCCTATaaa                                                                                                                             >  2:1293451/1‑141 (MQ=255)
                ttACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATaaa                                                                                                                             <  1:444673/141‑1 (MQ=255)
                   cTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAAt                                                                                                                          >  2:1517309/1‑141 (MQ=255)
                   cTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAAt                                                                                                                          >  2:815253/1‑141 (MQ=255)
                    ttCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATg                                                                                                                         >  1:1407533/1‑141 (MQ=255)
                          aCCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAAc                                                                                                                   <  1:118125/141‑1 (MQ=255)
                           ccACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAAcc                                                                                                                  <  1:1146767/141‑1 (MQ=255)
                            cACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCa                                                                                                                 >  2:385033/1‑141 (MQ=255)
                             aCGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCGAGACATTTGTGCCTATAAAAATGCTTAACCaa                                                                                                                >  1:584459/1‑141 (MQ=255)
                             aCGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCaa                                                                                                                >  1:1544085/1‑141 (MQ=255)
                                cTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGAt                                                                                                             <  2:531080/141‑1 (MQ=255)
                                cTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGAt                                                                                                             <  2:196636/141‑1 (MQ=255)
                                 aaaaGTGTAATATGATAAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGAAAAAAAAAAAATGCTTAACCAAGAtt                                                                                                            <  2:733340/140‑1 (MQ=255)
                                   aaGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGAtttt                                                                                                          <  1:287369/141‑1 (MQ=255)
                                   aaGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAAGTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGAtttt                                                                                                          <  1:27750/141‑1 (MQ=255)
                                     gtgtAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTta                                                                                                        >  1:106500/1‑141 (MQ=255)
                                     gtgtAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTta                                                                                                        >  2:160631/1‑141 (MQ=255)
                                      tgtAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTtat                                                                                                       <  2:1444901/141‑1 (MQ=255)
                                         aaTATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATAtt                                                                                                    >  2:1366983/1‑141 (MQ=255)
                                          atatGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGgacaatatgtgcaagaagtacaacttcaatataaaaatcttgg                                                                                                   >  1:1392106‑M1/1‑98 (MQ=255)
                                          atatGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTg                                                                                                   <  2:63433/141‑1 (MQ=255)
                                          atatGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTg                                                                                                   >  1:416427/1‑141 (MQ=255)
                                          atatGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTg                                                                                                   <  2:1304278/141‑1 (MQ=255)
                                          atatGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTNGTGNCTATAAAAATGCTTNNCCAAGATTTTTATATTg                                                                                                   <  1:1365174/141‑1 (MQ=255)
                                             tGACTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTACAATAAAAAAGGCAAGACATTTGTGCCGATAAAAATGCTTAACCAAGATTTTTATATTGAAg                                                                                                <  2:1400302/141‑1 (MQ=255)
                                              gATTAATAACTTATCATTTTTATCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGt                                                                                               <  2:827836/141‑1 (MQ=255)
                                              gATTAATAACTTATCATTTTTAGCAATACATTACAACCATTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGt                                                                                               >  1:878834/1‑141 (MQ=255)
                                                 taataaCTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGt                                                                                            <  2:106500/141‑1 (MQ=255)
                                                  aataaCTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTa                                                                                           <  1:283431/141‑1 (MQ=255)
                                                    taaCTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTAct                                                                                         <  1:556836/141‑1 (MQ=255)
                                                      aCTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTGTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTActtc                                                                                       <  2:684310/141‑1 (MQ=255)
                                                        ttATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTActtctt                                                                                     >  2:1592912/1‑141 (MQ=255)
                                                         tATCATTTTTAGCAATACATTACAACCTTTTTCTTTAATTTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAACAATTCTTAACCAAAATTTTTATATTGAATTTGTACTTCTTg                                                                                    >  2:1019441/1‑141 (MQ=255)
                                                         tATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTg                                                                                    >  1:405367/1‑141 (MQ=255)
                                                           tCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAGAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGca                                                                                  <  1:767136/141‑1 (MQ=255)
                                                           tCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGca                                                                                  <  1:1002899/141‑1 (MQ=255)
                                                           tCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGca                                                                                  <  2:773142/141‑1 (MQ=255)
                                                              tttttAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACat                                                                               <  1:996255/141‑1 (MQ=255)
                                                                 ttAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATAtt                                                                            <  1:1399189/141‑1 (MQ=255)
                                                                 ttAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATAtt                                                                            <  1:1138281/141‑1 (MQ=255)
                                                                    gCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTATAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTc                                                                         <  2:147424/141‑1 (MQ=255)
                                                                      aaTACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCct                                                                       >  2:1428231‑M2/1‑139 (MQ=255)
                                                                      aaTACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCct                                                                       <  2:829046‑M2/141‑3 (MQ=255)
                                                                      aaTACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCct                                                                       <  1:1546091‑M2/141‑3 (MQ=255)
                                                                       tttttttacaacCTTTTTCAGAAAATTCGCTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGTCAAGACATTTTTTCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCctt                                                                      <  2:542288‑M2/136‑4 (MQ=255)
                                                                       aTACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCctt                                                                      <  2:1615046‑M2/141‑4 (MQ=255)
                                                                          cATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGgacaatatgtgcaagaagtacaacttcaatataaaaatcttggttaagcatttttataggcacaaatgtcttgcc                                                                   <  2:1392106‑M1/141‑76 (MQ=255)
                                                                                 aCCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTATCCTTGCCTtattat                                                            >  1:1375667/1‑141 (MQ=255)
                                                                                    tttttCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTa                                                         >  1:429451/1‑141 (MQ=255)
                                                                                     ttttCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTaa                                                        >  1:1237164/1‑141 (MQ=255)
                                                                                        tCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGgacaatatgtgcaagaagtacaacttcaatataaaaatcttggttaagcatttttatagacacaaatgtcttgccttttttattttaaa                                                     <  2:1184620‑M1/141‑90 (MQ=255)
                                                                                        tCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGt                                                     >  1:754061/1‑141 (MQ=255)
                                                                                         cAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGtt                                                    <  2:121975/141‑1 (MQ=255)
                                                                                         cAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGtt                                                    <  2:231801/141‑1 (MQ=255)
                                                                                         cAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGtt                                                    <  2:1489625/141‑1 (MQ=255)
                                                                                         aaGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGtt                                                    <  2:1350619/140‑1 (MQ=255)
                                                                                           gAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTAt                                                  <  1:559735/141‑1 (MQ=255)
                                                                                           gAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTAt                                                  >  2:167273/1‑141 (MQ=255)
                                                                                             aaaTTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTAttt                                                >  1:1105335/1‑141 (MQ=255)
                                                                                                   ggTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATtttctttc                                          >  2:1415781/1‑141 (MQ=255)
                                                                                                   ggTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATtttctttc                                          >  2:1138984/1‑141 (MQ=255)
                                                                                                   ggTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATtttctttc                                          >  1:510387/1‑141 (MQ=255)
                                                                                                          tGATTTTAGAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGCAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCttt                                   <  2:156011/141‑1 (MQ=255)
                                                                                                              tttAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTttat                               <  2:344950/141‑1 (MQ=255)
                                                                                                                 tgccttttttattttaaaaAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTaa                            >  1:372135/15‑141 (MQ=255)
                                                                                                                 aaaaaattttAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTaa                            >  1:1503326/7‑141 (MQ=255)
                                                                                                                  aaaTTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTttattata                           >  2:49334/1‑139 (MQ=255)
                                                                                                                   aatttaaaaaaataaaaAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAAt                          <  2:976696/133‑1 (MQ=255)
                                                                                                                     ttttttAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGca                                                                                  <  1:146954/83‑1 (MQ=255)
                                                                                                                      tttttAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTa                       >  1:809717/1‑141 (MQ=255)
                                                                                                                       ttttAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTaa                      <  2:384115/141‑1 (MQ=255)
                                                                                                                       ttttAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTaa                      >  2:1252633/1‑141 (MQ=255)
                                                                                                                        tttAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAAc                     <  1:925698/141‑1 (MQ=255)
                                                                                                                           aaaataaaaAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTCATTTTAACTAt                  >  2:896603/1‑141 (MQ=255)
                                                                                                                            aaataaaaAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTAtt                 >  1:742787/1‑141 (MQ=255)
                                                                                                                             tttaaaaAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTAttc                >  1:85333/3‑141 (MQ=255)
                                                                                                                              ataaaaAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTAttct               >  2:862288/1‑141 (MQ=255)
                                                                                                                                 aaaaaGGCAAGACATTTGTGCCTATAAAAATGCTTACCCAAGATTTTTATCTTGAAATTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCa            <  1:487519/141‑1 (MQ=255)
                                                                                                                                 aaaaaGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCa            <  2:436616/141‑1 (MQ=255)
                                                                                                                                  agaaggCAAGgacaatatgtgcaagaaggacaacttcaatataaaaatcttggttaagcatttttataggcacaaatgtcttgccttttttattttaaaaaattttaaaatcaatacaccgaattttctgaaaaaggttgt           <  1:723728‑M1/139‑132 (MQ=255)
                                                                                                                                  aaaaGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCAt           <  2:1425699/141‑1 (MQ=255)
                                                                                                                                   aaaGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATa          >  1:385636/1‑141 (MQ=255)
                                                                                                                                    aaGGCAAGgacaatatgtgcaagaagtacaacttcaatataaaaatcttggttaagcatttttataggcacaaatgtcttgccttttttattttaaaaaattttaaaatcaatacaccgaattttctgaaaaaggttgtaa         >  2:334846‑M1/1‑8 (MQ=255)
                                                                                                                                     aGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTCTTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAAt        <  2:1107632/141‑1 (MQ=255)
                                                                                                                                     aGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAAt        <  1:1083801/141‑1 (MQ=255)
                                                                                                                                     aGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAAt        <  1:1592912/141‑1 (MQ=255)
                                                                                                                                     aGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAAt        >  1:623487/1‑141 (MQ=255)
                                                                                                                                       gCAAGgacaatatgtgcaagaagtacaacttcaatataaaaatcttggttaagcatttttataggcacaaatgtcttgccttttttattttaaaaaattttaaaatcaatacaccgaattttctgaaaaaggttgtaatgt      <  2:1193774‑M1/141‑137 (MQ=255)
                                                                                                                                         aaGgacaatatgtgcaagaagtacaacttcaatataaaaatcttggttaagcatttttataggcacaaatgtcttgccttttttattttaaaaaattttaaaatcaatacaccgaattttctgaaaaaggttgtaatgtat    <  1:206597‑M1/141‑139 (MQ=255)
                                                                                                                                          aGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGa   <  1:228669/141‑1 (MQ=255)
                                                                                                                                           ggacaatatgtgcaagaagtacaacttcaatataaaaatcttgcttaagcatttttataggcacaaatgtcttgccttttttattttaaaaaattttaaaatcaatacaccgaattttctgaaaaaggttgtaatgtattg  <  1:1305340‑M1/141‑141 (MQ=255)
                                                                                                                                           gACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGAt  <  2:335133/141‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                            
ATTTTCGTTGTTTGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGAT  >  CP000730/2840724‑2841003

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.