BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2840863	145 (1.120)	3 (0.020)	3/238	NT	2.1%	intergenic (‑184/‑7)	hisZ/USA300HOU_2682	possible ATP phosphoribosyltransferase regulatory subunit/hypothetical protein
*	?	CP000730	= 2840932	146 (1.210)	3 (0.020)	3/238	NT	2.1%	coding (63/108 nt)	USA300HOU_2682	hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 168 total aligned reads displayed.

GCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTAAAAAACGGTTTGAGTTTA  >  CP000730/2840792‑2841071

gCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTATAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTc                                                                                                                                             <  2:147424/141‑1 (MQ=255)

 cAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAAGCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCc                                                                                                                                            <  1:1305340‑M2/141‑2 (MQ=255)

  aaTACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCct                                                                                                                                           <  2:829046‑M2/141‑3 (MQ=255)

  aaTACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCct                                                                                                                                           <  1:1546091‑M2/141‑3 (MQ=255)

   tttttttacaacCTTTTTCAGAAAATTCGCTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGTCAAGACATTTTTTCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCctt                                                                                                                                          <  2:542288‑M2/136‑4 (MQ=255)

   aTACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCctt                                                                                                                                          <  2:1615046‑M2/141‑4 (MQ=255)

   aTACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCctt                                                                                                                                          <  1:206597‑M2/141‑4 (MQ=255)

     aCATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCcttgc                                                                                                                                        <  2:1193774‑M2/141‑6 (MQ=255)

          aCAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTCCTTCTTGCACATATTGTCcttgccttct                                                                                                                                   <  1:723728‑M2/141‑11 (MQ=255)

                tttttCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTa                                                                                                                             >  1:429451/1‑141 (MQ=255)

                 ttttCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTaa                                                                                                                            >  1:1237164/1‑141 (MQ=255)

                    tCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGt                                                                                                                         >  2:884405/1‑141 (MQ=255)

                    tCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGt                                                                                                                         >  1:754061/1‑141 (MQ=255)

                    tCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGt                                                                                                                         >  2:502333/1‑141 (MQ=255)

                     cAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGtt                                                                                                                        <  2:1351438/141‑1 (MQ=255)

                     cAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGtt                                                                                                                        <  2:121975/141‑1 (MQ=255)

                     cAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGtt                                                                                                                        <  2:231801/141‑1 (MQ=255)

                     aaGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGtt                                                                                                                        <  2:1350619/140‑1 (MQ=255)

                       gAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTAt                                                                                                                      >  2:1138775/1‑141 (MQ=255)

                       gAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTAt                                                                                                                      <  1:559735/141‑1 (MQ=255)

                         aaaTTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTAttt                                                                                                                    >  1:1105335/1‑141 (MQ=255)

                             tCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATtttctt                                                                                                                <  1:829046/141‑1 (MQ=255)

                              cGGTGTATTGATTTTAAAATTTTTTTTTTTATAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATtttcttt                                                                                                               >  2:460465/1‑141 (MQ=255)

                               gttgtATTGATTTTAAAATAAATAAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATtttctttc                                                                                                              <  2:1171026/139‑1 (MQ=255)

                               ggTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATtttctttc                                                                                                              >  2:1415781/1‑141 (MQ=255)

                               ggTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATtttctttc                                                                                                              >  1:510387/1‑141 (MQ=255)

                                gtgtATTGATTTTAAGATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTttctttct                                                                                                             <  1:1372130/141‑1 (MQ=255)

                                          tttAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTttat                                                                                                   <  1:114120/141‑1 (MQ=255)

                                             tgccttttttattttaaaaAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTaa                                                                                                >  1:372135/15‑141 (MQ=255)

                                             aaaaaattttAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTaa                                                                                                >  1:1503326/7‑141 (MQ=255)

                                               aatttaaaaaaataaaaAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAAt                                                                                              <  2:976696/133‑1 (MQ=255)

                                                  tttttAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTa                                                                                           >  1:809717/1‑141 (MQ=255)

                                                  tttttAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTa                                                                                           <  2:389665/141‑1 (MQ=255)

                                                  tttttAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTa                                                                                           <  2:140142/141‑1 (MQ=255)

                                                   ttttAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTaa                                                                                          <  2:384115/141‑1 (MQ=255)

                                                   ttttAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTaa                                                                                          >  2:1252633/1‑141 (MQ=255)

                                                    tttAAAATAAAAAAGGCAAGACATTTGTGTCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCcttgccttttttattttaaaaaattttaaaatcaatacaccgaattttctga                                                                                         <  2:1184620‑M2/141‑53 (MQ=255)

                                                    tttAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAAc                                                                                         <  1:590020/141‑1 (MQ=255)

                                                       aaaataaaaAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTCATTTTAACTAt                                                                                      >  2:896603/1‑141 (MQ=255)

                                                          ataaaaAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTAttct                                                                                   >  2:862288/1‑141 (MQ=255)

                                                              aaaaGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCAt                                                                               <  2:1425699/141‑1 (MQ=255)

                                                               aaaGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATa                                                                              <  1:395932/141‑1 (MQ=255)

                                                                 aGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTCTTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAAt                                                                            <  2:1107632/141‑1 (MQ=255)

                                                                 aGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAAt                                                                            <  2:1133627/141‑1 (MQ=255)

                                                                 aGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAAt                                                                            <  1:1083801/141‑1 (MQ=255)

                                                                 aGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAAt                                                                            >  1:623487/1‑141 (MQ=255)

                                                                 aGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAAt                                                                            <  1:1592912/141‑1 (MQ=255)

                                                                    cAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATccc                                                                         <  2:339491/141‑1 (MQ=255)

                                                                      aGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGa                                                                       <  1:228669/141‑1 (MQ=255)

                                                                       gACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGAt                                                                      <  2:335133/141‑1 (MQ=255)

                                                                       gACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGAt                                                                      >  1:1196145/1‑141 (MQ=255)

                                                                        aCATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGAtt                                                                     <  2:623487/141‑1 (MQ=255)

                                                                             tgtgCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCtt                                                                <  1:247780/141‑1 (MQ=255)

                                                                              gtgCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTATATTTAACTATTCTTCATAATCCCGATTCCCttt                                                               >  2:1437745/1‑141 (MQ=255)

                                                                                gCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTaa                                                             >  2:1531107/1‑141 (MQ=255)

                                                                                 ccTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTaaa                                                            <  2:878834/141‑1 (MQ=255)

                                                                                   tataAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAAc                                                                                         >  2:28328/1‑110 (MQ=255)

                                                                                   tataAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAAc                                                                                         <  1:28328/110‑1 (MQ=255)

                                                                                   tataAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGt                                                          <  1:862288/141‑1 (MQ=255)

                                                                                    ataAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTa                                                         <  1:651049/141‑1 (MQ=255)

                                                                                       aaaaTGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACg                                                      <  2:1475092/141‑1 (MQ=255)

                                                                                         aaTGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTc                                                    <  1:344843/141‑1 (MQ=255)

                                                                                            gCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTAt                                                 <  1:331379/141‑1 (MQ=255)

                                                                                             cTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATc                                                <  1:542288/141‑1 (MQ=255)

                                                                                             cTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATc                                                >  2:634073/1‑141 (MQ=255)

                                                                                             cTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATc                                                <  1:474256/141‑1 (MQ=255)

                                                                                              ttAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCt                                               <  2:720271/141‑1 (MQ=255)

                                                                                               tAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCtt                                              <  1:1138984/141‑1 (MQ=255)

                                                                                                 aCCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGt                                            >  2:1197620/1‑141 (MQ=255)

                                                                                                  ccAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCcttgccttttttattttaaaaaattttaaaatcaatacaccgaattttctgaaaaaggttgtaatgtattgctaaaaatgataagttattaatcatat                                           >  1:1392106‑M2/1‑43 (MQ=255)

                                                                                                       aTTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACta                                      >  1:1617855/1‑141 (MQ=255)

                                                                                                          tttATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACtatat                                   <  1:426838/141‑1 (MQ=255)

                                                                                                           ttATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACtatata                                  >  1:1339951/1‑141 (MQ=255)

                                                                                                           ttATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACtatata                                  <  1:1415781/141‑1 (MQ=255)

                                                                                                            tataTTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTAttc                                                                                    >  2:1031920/1‑90 (MQ=255)

                                                                                                            tataTTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTAttc                                                                                    <  1:1031920/90‑1 (MQ=255)

                                                                                                            tataTTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATAc                                 >  2:1557190/1‑141 (MQ=255)

                                                                                                            tataTTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATAc                                 >  1:808740/1‑141 (MQ=255)

                                                                                                            tataTTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATAc                                 <  2:1503326/141‑1 (MQ=255)

                                                                                                            tataTTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATAc                                 >  1:919489/1‑141 (MQ=255)

                                                                                                                  gAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTACAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTCAAGTACCGTATATCTTGTTTGCTCTATACAttttt                           >  2:1570231/1‑140 (MQ=255)

                                                                                                                  gAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGt                                                     >  2:329012/1‑115 (MQ=255)

                                                                                                                  gAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGt                                                     <  1:329012/115‑1 (MQ=255)

                                                                                                                      ttGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGa                       <  2:681908/141‑1 (MQ=255)

                                                                                                                       tGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGAt                      >  1:140838/1‑141 (MQ=255)

                                                                                                                        gTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACAttataaagaat                     <  2:315037/141‑10 (MQ=255)

                                                                                                                          aCTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACAtaaaaaaaaaaaa                   <  2:1091762/141‑13 (MQ=255)

                                                                                                                          aCTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTaa                   >  1:367584/1‑141 (MQ=255)

                                                                                                                          aCTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTaa                   >  1:974479/1‑141 (MQ=255)

                                                                                                                           cttcttGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTaaa                  <  2:1196145/141‑1 (MQ=255)

                                                                                                                           cttcttGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTaaa                  <  1:740208/141‑1 (MQ=255)

                                                                                                                           attcttGCACATATTGTCCTTGCCTTATTATATAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTaaa                  <  2:405367/140‑1 (MQ=255)

                                                                                                                                 gCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTAAAAAACgg            >  1:1111493/1‑141 (MQ=255)

                                                                                                                                   acaTATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTAAAAAACGGtt          <  2:497219/141‑1 (MQ=255)

                                                                                                                                   acaTATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTAAAAAACGGtt          <  2:1602190/141‑1 (MQ=255)

                                                                                                                                       atTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTAAAAAACGGTTTGAg      <  2:1544085/141‑1 (MQ=255)

                                                                                                                                       atTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTGTACTATATACATTTTCAGGATTAAAAAACGGTTTGAg      <  1:1197620/141‑1 (MQ=255)

                                                                                                                                        ttGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTa                                                              <  1:862807/84‑1 (MQ=255)

                                                                                                                                         tGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTAAAAAACGGTTTGAGtt    <  1:100397/141‑1 (MQ=255)

                                                                                                                                          gTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTAAAAAACGGTTTGAGttt   >  1:1121932/1‑141 (MQ=255)

GCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTAAAAAACGGTTTGAGTTTA  >  CP000730/2840792‑2841071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.