| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1245321 = | 66 (0.820) | 6 (0.080) | 6/250 | 10.3 | 9.1% | coding (146/156 nt) | USA300HOU_1168 | hypothetical protein |
| ? | CP000730 | 1245355 = | 58 (0.780) | intergenic (+24/‑83) | USA300HOU_1168/hmrB | hypothetical protein/possible acyl carrier protein HmrB | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTTTTACTTTATCGAAATTTTCCACGTCGATTCACCTCCTTTAAAAATGCCTATACATAGACTACTATATTTTCCCATTTTAAATTCTAAAAAACAAGTAGAAATTTTAGAAACACTTATCAATTTATTGATTAGTGTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1245462‑1245321‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtgtttctAAAATTTCTACTTGTTTTTTAGAATTTAAAATGGGAAAATATAGTAGTCTATGTATAGGCATTTTTAAAGGAGGTGAATCGACGTGGAAAATTTCGATAAAGTAAAAGATATCATCGTTGACCGTTTAGGTGTAGACGC > CP000730/1245355‑1245493 CTTTTACTTTATCGAAATTTTCCACGTCGATTCACCTCCTTTAAAAATGCCTATACATAGACTACTATATTTTCCCATTTTAAATTCTAAAAAACAAGTAGAAATTTTAGAAGCACTTATCAATTTATTGATTAGTGTTTC > 1:130559/1‑141CTTTTACTTTATCGAAATTTTCCACGTCGATTCACCTCCTTTAAAAATGCCTATACATAGACTACTATATTTTCCCATTTTAAATTCTAAAAAACAAGTAGAAATTTTAGAAACACTTATCAATTTATTGATTAGTGTTTC > 2:812570/1‑141 AGACTACTATATTTTCCCATTTTAAATTCTAAAAAACAAGTAGAAATTTTAGAAACACTTATCAATTTATTGATTAGTGTTTCTAAAATTTCTACTTGTTTTTTAGAATTTAAAATGGGAAAATATAGTAGTCTATGTATA > 1:426331/1‑141 GACTACTATATTTTCCCATTTTAAATTCTAAAAAACAAGTAGAAATTTTAGAAACACTTATCAATTTATTGATTAGTGTTTCTAAAATTTCTACTTGTTTTTTAGAATTTAAAATGGGAAAATATAGTAGTC > 1:276504/1‑132 GACTACTATATTTTCCCATTTTAAATTCTAAAAAACAAGTAGAAATTTTAGAAACACTTATCAATTTATTGATTAGTGTTTCTAAAATTTCTACTTGTTTTTTAGAATTTAAAATGGGAAAATATAGTAGTC < 2:276504/132‑1 TACTATATTTTCCCATTTTAAATTCTAAAAAACAAGTAGAAATTTTAGAAACACTTATCAATTTATTGATTAGTGTTTCTAAAATTTCTACTTGTTTTTTAGAATTTAAAATGGGAAAATATAGTA < 2:522430/126‑1 TACTATATTTTCCCATTTTAAATTCTAAAAAACAAGTAGAAATTTTAGAAACACTTATCAATTTATTGATTAGTGTTTCTAAAATTTCTACTTGTTTATTAGAATTTAAAATGGGAAAATATAGTA > 1:522430/1‑126 ACAAGTAGAAATTTTAGAAACACTTATCAATTTATTGATTAGTGTTTCTAAAATTTCTACTTGTTTTTTAGAATTTAAAATGGGAAAATATAGTAGTCTATGTATAGGCATTTTTAAAGGAGGTGAATCGACGTGGAAAAT > 2:373108/1‑141 AGTGTTTCTAAAATTTCTACTTGTTTTTTAGAATTTAAAATGGGAAAATATAGTAGTCTATGTATAGGCATTTTTAAAGGAGGTGAATCGACGTGGAAAATTTCGATAAAGTAAAAGATATCATCGTTGACCGTTTAGGTG < 2:98272/141‑1 GTGTTTCTAAAATTTCTACTTGTTTTTTAGAATTTAAAATGGGAAAATATAGTAGTCTATGTATAGGCATTTTTAAAGGAGGTGAATCGACGTGGAAAATTTCGATAAAGTAAAAGATATCATCGTTGACCGTTTAGGTGT < 2:857030/141‑1 TGTTTCTAAAATTTCTACTTGTTTTTTAGAATTTAAAATGGGAAAATATAGTAGTCTATGTATAGGCATTTTTAAAGGAGGTGAATCGACGTGGAAAATTTCGATAAAGTAAAAGATATCATCGTTGACCGTTTAGGTGTA > 1:499511/1‑141 TTTCTAAAATTTCTACTTGTTTTTTAGAATTTAAAATGGGAAAATATAGTAGTCTATGTATAGGCATTTTTAAAGGAGGTGAATCGACGTGGAAAATTTCGATAAAGTAAAAGATATCATCGTTGACCGTTTAGGTGTAGA > 1:136097/1‑141 TTCTAAAATTTCTACTTGTTTTTTAGAATTTAAAATGGGAAAATATAGTAGTCTATGTATAGGCCTTTTTAAAGGAGGTGAATCGACGTGGAAAATTTCGATAAAGTAAAAGATATAATCGTTGACCGTTTAGGTGTAGAC > 1:509000/1‑141 TCTAAAATTTCTACTTGTTTTTTAGAATTTAAAATGGGAAAATATAGTAGTCTATGTATAGGCATTTTTAAAGGAGGTGAATCGACGTGGAAAATTTCGATAAAGTAAAAGATATCATCGTTGACCGTTTAGGTGTAGACG < 2:689381/141‑1 TCTAAAATTTCTACTTGTTTTTTAGAATTTAAAATGGGAAAATATAGTAGTCTATGTATAGGCATTTTTAAAGGAGGTGAATCGACGTGGAAAATTTCGATAAAGTAAAAGATATCATCGTTGACCGTTTAGGTGTAGACG > 2:88689/1‑141 CTAAAATTTCTACTTGTTTTTTAGAATTTAAAATGGGAAAATATAGTAGTCTATGTATAGGCATTTTTAAAGGAGGTGAATCGACGTGGAAAATTTCGATAAAGTAAAAGATATCATCGTTGACCGTTTAGGTGTAGACGC < 1:518592/141‑1 CTTTTACTTTATCGAAATTTTCCACGTCGATTCACCTCCTTTAAAAATGCCTATACATAGACTACTATATTTTCCCATTTTAAATTCTAAAAAACAAGTAGAAATTTTAGAAACACTTATCAATTTATTGATTAGTGTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1245462‑1245321‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtgtttctAAAATTTCTACTTGTTTTTTAGAATTTAAAATGGGAAAATATAGTAGTCTATGTATAGGCATTTTTAAAGGAGGTGAATCGACGTGGAAAATTTCGATAAAGTAAAAGATATCATCGTTGACCGTTTAGGTGTAGACGC > CP000730/1245355‑1245493 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |