New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2731894	80 (1.070)	9 (0.120) +ATTATAAACA	5/230	10.3	10.3%	coding (55/99 nt)	USA300HOU_2589	hypothetical protein
	?	CP000730	2731895 =	84 (1.050)					coding (54/99 nt)	USA300HOU_2589	hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCTAAATCTGCAATTTGTTGCACAGTAATCTCTTCTAATTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2731757‑2731894 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGTGATACAAACAAACAGAAAAAGGTGATAACAATGA  >  CP000730/2731895‑2732008                                                                                                                                           ||||||||||                                                                                                                   GCTAAATCTGCAATTTGTTGCACAGTAATCTCTTCTAATTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATT                                                                                                                           >  2:852003/1‑141   TAAATCTGCAATTTGTTGCACAGTAATCTCTTCTAATTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTAT                                                                                                                         >  1:860513/1‑141     AATCTGCAATTTGTTGCACAGTAATCTCTTCTAATTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAA                                                                                                                       >  2:806355/1‑141       TCTGCAATTTGTTGCACAGTAATCTCTTCTAATTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAAC                                                                                                                     <  1:779068/141‑1                                                                    CATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACAATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATG                                                        >  1:511092/1‑141                                                                          TCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACAATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACC                                                  <  1:573505/141‑1                                                                                                AATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACAATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGTGATACAAA                            >  2:198413/1‑141                                                                                                        GATCTATAGTCATTTATATCAAGTCCTCCCCAATGATTATAAACAATTATAAAACTGATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGTGATACAAACAAACAGA                    <  1:64399/141‑1                                                                                                                          TCAAGTCCTCCCCAATGATTATAAACAATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGTGATACAAACAAACAGAAAAAGGTGATAACAATGA  <  2:860513/141‑1                                                                                                                                           ||||||||||                                                                                                                   GCTAAATCTGCAATTTGTTGCACAGTAATCTCTTCTAATTGGTGTTGATGTAAAAGTTCAATAAATGCATTTCTCATTGCAACTTGTGATTTTCTAATACGTCGATCTATAGTCATTTATATCAAGTCCTCCCCAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2731757‑2731894 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTATAAACGTTATGTTCATTATCCCACAAATCTCCAACATTGATGATTGGCACACAATGTTTACCTGTTTAATATAGGTGATACAAACAAACAGAAAAAGGTGATAACAATGA  >  CP000730/2731895‑2732008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.