| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 234750 | 98 (1.220) | 9 (0.120) | 9/248 | 8.6 | 9.1% | intergenic (+48/+217) | USA300HOU_0211/USA300HOU_0212 | hypothetical protein/oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein |
| ? | CP000730 | = 234763 | 89 (1.200) | intergenic (+61/+204) | USA300HOU_0211/USA300HOU_0212 | hypothetical protein/oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACTTTGTGTTTTTTGATCAAAGTTTATTTGAATGTGTTAATTATGAAAGAAAAAGAGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/234608‑234750‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatcccccgcCACTATGTGAAGTGCGGGGGATTATTTATATTTTATTAGAATATTCAGATTTTTGAGTGTGTCAACTTAGCTTAGTCAATGTATATTTAACGTCACTTACTCTTTTTCTTTCATAATTAACACATTCAAATAAACTTTG < CP000730/234763‑234625 ACTTTGTGTTTTTTGATCAAAGTTTATTTGAATGTGTTAATTATGAAAGAAAAAGAGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCC < 2:542516/141‑1 GTGTTTTTTGATCAAAGTTTATTTGAATGTGTTAATTATGAAAGAAAAAGAGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCCct > 2:454681/1‑139 GTTTTTTGATCAAAGTTTATTTGAATGTGTTAATTATGAAAGAAAAAGAGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCCACTA < 2:127885/141‑1 aataAAAGTTTATTTTAATGTGTTAATTATGAAAGAAAAAGAGTAAGTGACGTAAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCCACTATGTGAAG < 2:489835/137‑1 ATCAAAGTTTATTTGAATGTGTTAATTATGAAAGAAAAAGAGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCCACTATGTGAAGT < 2:942705/141‑1 AGAGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCCACTATGTGAAGTGCG > 1:472903/1‑106 AGAGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCCACTATGTGAAGTGCG < 2:472903/106‑1 GTAATTGATGTTAAATATACATTGACTAAGCTAAGTTGACACACTCGAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCCACTATGTGAAGTGCGGGGGATTATTT > 1:34805/1‑114 GTAATTGATGTTAAATATACATTGACTAAGCTAAGTTGACACACTCGAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCCACTATGTGAAGTGCGGGGGATTATTT < 2:34805/114‑1 TAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGCCACTATGTGAAGTGCGGGGGATTATTTATATTTTATTAGAATATTCAGATTTTTGAGTGTGTCAA < 2:983665/141‑1 AATCCCCCGCCACTATGTGAAGTGCGGGGGATTATTTATATTTTATTAGAATATTCAGATTTTTGAGTGTGTCAACTTAGCTTAGTCAATGTATATTTAACGTCACTTACTCTTTTTCTTTCATAATTAACACATTCAAAT < 2:287365/141‑1 AATCCCCCGCCACTATGTGAAGTGCGGGGGATTATTTATATTTTATTAGAATATTCAGATTTTTGAGTGTGTCAACTTAGCTTAGTCAATGTATATTTAACGTCACTTACTCTTTTTCTTTCATAATTAACACATTCAAAT > 2:73314/1‑141 AATCCCCCGCCACTACGTGAAGTGCGGGGGATTATTTATATTTTATTAGAATATTCAGATTTTTGAGTGTGTCAACTTAGCTTAGTCAATGTATATTTAACGTCACTTACTCTTTTTCTTTCATAATTAACACATTCAAAT < 2:681332/141‑1 TCCCCCGCCACTATGTGAAGTGCGGGGGATTATTTATATTTTATTAGAATATTCAGATTTTTGAGTGTGTCAACTTAGCTTAGTCAATGTATATTTAACGTCACTTACTCTTTTTCTTTCATAATTAACACATTCAAATAA > 2:1007303/1‑141 TCCCCCGCCACTATGTGAAGTGCGGGGGATTATTTATATTTTATTAGAATATTCAGATTTTTGAGTGTGTCAACTTAGCTTAGTCAATGTATATTTAACGTCACTTACTCTTTTTCTTTCATAATTAACACATTCAAATAA < 2:234480/141‑1 TCCCCCGCCACTATGTGAAGTGCGGGGGATTATTTATATTTTATTAGAATATTCAGATTTTTGAGTGTGTCAACTTAGCTTAGTCAATGTATATTTAACGTCACTTACTCTTTTTCTTTCATAATTAACACATTCAAATAA > 2:1006964/1‑141 TCCCCCGCCACTATGTGAAGTGCGGGGGATTATTTATATTTTATTAGAATATTCAGATTTTTGAGTGTGTCAACTTAGCTTAGTCAATGTATATTTAACGTCACTTACTCTTTTTCTTTCATAATTAACACATTCAAATAA < 2:81334/141‑1 TCCCCCGCCACTATGTGAAGTGCGGGGGATTATTTATATTTTATTAGAATATTCAGATTTTTGAGTGTGTCAACTTAGCTTAGTCAATGTATATTTAACGTCACTTACTCTTTTTCTTTCATAATTAACACATTCAAATAA < 2:887983/141‑1 TCCCCCGCCACTATGTGAAGTGCGGGGGATTATTTATATTCTATTAGAATATTCAGATTTTTGAGTGTGTCAACTTAGCTTAGTCAATGTATATTTAACGTCACTTACTCTTTTTCTTTCATAATTAACACATTCAAATAA > 2:870633/1‑141 CCCCCGCCACTATGTGAAGTGCGGGGGATTATTTATATTTTATTAGAATATTCAGATTTTTGAGTGTGTCAACTTAGCTTAGTAAATGTATATTTAACGTCACTTACTCTTTTTCTTTCATAATTAACACATTCAAATAAA > 1:273122/1‑141 GCCACTATGTGAAGTGCGGGGGATTATTTATATTTTATTAGAATATTCAGATTTTTGAGTGTGTCAACTTAGCTTAGTCAATGTATATTTAACGTCACTTACTCTTTTTCTTTCATAATTAACACATTCAAATAAACTTTG < 2:259096/141‑1 ACTTTGTGTTTTTTGATCAAAGTTTATTTGAATGTGTTAATTATGAAAGAAAAAGAGTAAGTGACGTTAAATATACATTGACTAAGCTAAGTTGACACACTCAAAAATCTGAATATTCTAATAAAATATAAATAATCCCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/234608‑234750‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatcccccgcCACTATGTGAAGTGCGGGGGATTATTTATATTTTATTAGAATATTCAGATTTTTGAGTGTGTCAACTTAGCTTAGTCAATGTATATTTAACGTCACTTACTCTTTTTCTTTCATAATTAACACATTCAAATAAACTTTG < CP000730/234763‑234625 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |