mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 24.0% | 37.4 / 11.3 | 26 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 15 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3427172 = | NA (NA) | 6 (0.180) +82 bp |
4/434 | 4.5 | 10.6% | intergenic (‑20/+49) | ileU/rrsD | tRNA‑Ile/16S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4168373 | 70 (1.520) | noncoding (2/76 nt) | gltT | tRNA‑Glu | |||||
| * | ? | NC_000913 | 2729443 = | 57 (1.240) | 6 (0.180) +82 bp |
4/434 | 4.5 | 12.7% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | 3427172 = | NA (NA) | intergenic (‑20/+49) | ileU/rrsD | tRNA‑Ile/16S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913 | = 4349233 | 50 (1.090) | 4 (0.090) | 4/574 | 5.8 | 7.4% | intergenic (‑489/+82) | dcuB/dcuR | C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor/response regulator in two‑component regulatory system with DcuS |
| ? | NC_000913 | = 4349250 | 52 (1.180) | intergenic (‑506/+65) | dcuB/dcuR | C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor/response regulator in two‑component regulatory system with DcuS | |||||
| * | ? | NC_000913 | 2729475 = | 53 (1.150) | 5 (0.110) | 4/578 | 5.8 | 7.7% | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 4168363 | 68 (1.530) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 2729443 = | 57 (1.240) | 5 (0.110) | 4/578 | 5.8 | 8.9% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | 2729485 = | 47 (1.060) | intergenic (‑41/+131) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 1823910 | 42 (0.910) | 4 (0.090) | 4/586 | 5.9 | 9.1% | coding (396/888 nt) | cho | endonuclease of nucleotide excision repair |
| ? | NC_000913 | = 1823940 | 39 (0.860) | coding (426/888 nt) | cho | endonuclease of nucleotide excision repair | |||||
| * | ? | NC_000913 | = 982946 | 49 (1.060) | 4 (0.090) | 4/586 | 5.9 | 7.7% | intergenic (+52/‑129) | ldtD/ycbK | murein L,D‑transpeptidase/M15A protease‑related family periplasmic protein |
| ? | NC_000913 | = 982957 | 48 (1.060) | intergenic (+63/‑118) | ldtD/ycbK | murein L,D‑transpeptidase/M15A protease‑related family periplasmic protein | |||||
| * | ? | NC_000913 | = 2527064 | 50 (1.090) | 3 (0.070) | 3/578 | 6.4 | 6.1% | coding (119/999 nt) | yfeH | putative inorganic ion transporter |
| ? | NC_000913 | = 2527126 | 44 (0.990) | coding (181/999 nt) | yfeH | putative inorganic ion transporter | |||||
| * | ? | NC_000913 | = 4394287 | 33 (0.720) | 3 (0.070) | 3/590 | 6.5 | 9.2% | coding (222/1548 nt) | nnr | bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase |
| ? | NC_000913 | = 4394367 | 27 (0.590) | coding (302/1548 nt) | nnr | bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase | |||||
| * | ? | NC_000913 | 4166549 = | NA (NA) | 3 (0.070) | 3/592 | 6.5 | 4.9% | intergenic (+264/‑110) | murI/rrsB | glutamate racemase/16S ribosomal RNA of rrnB operon |
| ? | NC_000913 | 4240228 = | 59 (1.280) | intergenic (‑173/‑97) | yjbT/psiE | putative periplasmic protein/phosphate starvation inducible protein | |||||