mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 433 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 354,288 | 0 | T | G | 47.4% | 75.0 / 19.9 | 57 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 213,341 | 0 | A | G | 46.7% | 96.0 / 28.6 | 76 | G337G (GGA→GGG) | tilS | tRNA(Ile)‑lysidine synthetase |
| * | NC_000913 | 2,984,441 | 0 | A | C | 46.0% | 97.5 / 21.3 | 63 | G384G (GGT→GGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 1,397,830 | 0 | T | C | 44.8% | 63.4 / 17.7 | 58 | I265V (ATT→GTT) | uspE | stress‑induced protein |
| * | NC_000913 | 1,415,810 | 0 | T | C | 44.4% | 73.3 / 17.3 | 54 | D526G (GAT→GGT) | recE | Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease |
| * | NC_000913 | 4,538,109 | 0 | A | C | 44.1% | 81.5 / 26.7 | 61 | G219G (GGT→GGG) | nanM | N‑acetylneuraminic acid mutarotase |
| * | NC_000913 | 1,413,735 | 0 | A | T | 43.5% | 67.9 / 44.1 | 62 | Y2* (TAT→TAA) | ydaC | DUF1187 family protein, Rac prophage; putative double‑strand break reduction protein |
| * | NC_000913 | 993,913 | 0 | G | C | 43.3% | 115.3 / 24.5 | 67 | G44G (GGC→GGG) | ssuB | aliphatic sulfonate ABC transporter ATPase |
| * | NC_000913 | 1,376,505 | 0 | A | C | 42.4% | 115.6 / 21.1 | 66 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 345,328 | 0 | C | A | 42.4% | 89.5 / 31.2 | 59 | intergenic (+337/‑76) | yahL/yahM | uncharacterized protein/uncharacterized protein |
| * | NC_000913 | 3,511,923 | 0 | A | C | 42.2% | 108.3 / 11.2 | 64 | V141G (GTT→GGT) | yhfZ | putative DNA‑binding transcriptional regulator |
| * | NC_000913 | 357,880 | 0 | T | C | 42.1% | 92.4 / 14.3 | 57 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 15,382 | 0 | A | G | 41.8% | 86.0 / 16.1 | 55 | intergenic (+84/‑63) | dnaJ/insL1 | chaperone Hsp40, DnaK co‑chaperone/IS186 transposase |
| * | NC_000913 | 1,478,311 | 0 | A | G | 41.8% | 79.4 / 30.0 | 68 | E29G (GAG→GGG) | ynbB | putative CDP‑diglyceride synthase |
| * | NC_000913 | 1,684,749 | 0 | A | C | 41.7% | 96.9 / 14.2 | 60 | D164A (GAC→GCC) | tus | inhibitor of replication at Ter, DNA‑binding protein |
| * | NC_000913 | 1,163,371 | 0 | C | T | 41.3% | 56.8 / 30.7 | 46 | L38F (CTC→TTC) | thiK | thiamine kinase |
| * | NC_000913 | 993,917 | 0 | A | C | 41.3% | 91.9 / 16.5 | 63 | V43G (GTG→GGG) | ssuB | aliphatic sulfonate ABC transporter ATPase |
| * | NC_000913 | 3,578,287 | 0 | T | C | 40.3% | 99.4 / 18.6 | 62 | E147G (GAA→GGA) | gntR | d‑gluconate inducible gluconate regulon transcriptional repressor |
| * | NC_000913 | 1,413,761 | 0 | C | T | 40.3% | 104.9 / 41.9 | 67 | G56E (GGA→GAA) | ralR | Rac prophage; restriction alleviation protein |
| * | NC_000913 | 2,921,173 | 0 | T | C | 40.0% | 105.7 / 19.3 | 65 | I310V (ATT→GTT) | gudP | putative D‑glucarate transporter |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 50 (0.670) | 15 (0.230) | 15/266 | 6.9 | 22.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 57 (0.860) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 51 (0.690) | 13 (0.200) | 13/266 | 7.7 | 20.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 58 (0.870) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||