mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 343 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 29,496 | 0 | T | A | 50.0% | 65.3 / 38.6 | 60 | intergenic (+301/‑155) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 357,880 | 0 | T | C | 50.0% | 36.8 / 16.0 | 40 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,705,661 | 0 | T | C | 50.0% | 39.9 / 18.8 | 48 | I44V (ATC→GTC) | dppB | dipeptide/heme ABC transporter permease |
| * | NC_000913 | 3,705,653 | 0 | T | G | 48.9% | 46.1 / 17.2 | 47 | P46P (CCA→CCC) | dppB | dipeptide/heme ABC transporter permease |
| * | NC_000913 | 2,578,143 | 0 | A | C | 48.2% | 70.0 / 24.1 | 56 | L79V (TTA→GTA) | maeB | malic enzyme: putative oxidoreductase/phosphotransacetylase |
| * | NC_000913 | 3,177,748 | 0 | C | A | 47.5% | 53.3 / 40.1 | 59 | E55* (GAG→TAG) | nudF | ADP‑ribose pyrophosphatase |
| * | NC_000913 | 436,516 | 0 | C | A | 46.2% | 61.1 / 25.9 | 53 | Q295K (CAA→AAA) | thiL | thiamine monophosphate kinase |
| * | NC_000913 | 2,001,918 | 0 | A | C | 45.8% | 99.9 / 35.0 | 72 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| * | NC_000913 | 366,526 | 0 | T | G | 44.8% | 80.4 / 26.3 | 58 | T329P (ACC→CCC) | lacI | lactose‑inducible lac operon transcriptional repressor |
| * | NC_000913 | 4,538,109 | 0 | A | C | 44.6% | 95.1 / 16.3 | 57 | G219G (GGT→GGG) | nanM | N‑acetylneuraminic acid mutarotase |
| * | NC_000913 | 1,224,007 | 0 | C | A | 44.0% | 84.4 / 25.3 | 50 | intergenic (+100/+272) | ycgI/minE | pseudogene/cell division topological specificity factor |
| * | NC_000913 | 1,755,871 | 0 | T | A | 42.9% | 79.6 / 32.8 | 56 | G58G (GGT→GGA) | pykF | pyruvate kinase I |
| * | NC_000913 | 29,486 | 0 | C | A | 42.6% | 85.3 / 39.1 | 61 | intergenic (+291/‑165) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 2,421,443 | 0 | A | C | 42.6% | 112.9 / 12.2 | 61 | Y40S (TAC→TCC) | folX | D‑erythro‑7,8‑dihydroneopterin triphosphate 2'‑epimerase and dihydroneopterin aldolase |
| * | NC_000913 | 1,487,163 | 0 | C | T | 42.6% | 58.5 / 34.0 | 54 | intergenic (+200/‑72) | hrpA/ydcF | putative ATP‑dependent helicase/DUF218 superfamily protein, SAM‑binding |
| * | NC_000913 | 646,747 | 0 | T | G | 42.4% | 115.2 / 11.4 | 66 | T255P (ACC→CCC) | citG | 2‑(5''‑triphosphoribosyl)‑3'‑dephosphocoenzyme‑A synthase |
| * | NC_000913 | 213,341 | 0 | A | G | 42.3% | 67.4 / 18.2 | 52 | G337G (GGA→GGG) | tilS | tRNA(Ile)‑lysidine synthetase |
| * | NC_000913 | 1,097,581 | 0 | A | G | 42.3% | 85.3 / 17.4 | 52 | noncoding (72/88 nt) | serX | tRNA‑Ser |
| * | NC_000913 | 3,231,104 | 0 | C | A | 42.0% | 65.9 / 24.8 | 50 | A739A (GCC→GCA) | ygjK | alpha‑glucosidase |
| * | NC_000913 | 2,434,882 | 0 | T | G | 41.5% | 123.0 / 13.1 | 65 | Y252S (TAC→TCC) | truA | tRNA pseudouridine(38‑40) synthase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 55 (0.890) | 15 (0.270) | 14/266 | 5.5 | 24.6% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 43 (0.780) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 52 (0.840) | 11 (0.200) | 10/266 | 7.1 | 19.8% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 43 (0.780) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||