mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 37.5% | 63.7 / 62.3 | 68 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,286 | 0 | C | T | 21.4% | 125.2 / 38.5 | 70 | intergenic (+492/+150) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 18 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 42 (0.290) | 36/456 | 3.4 | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1207805 | 147 (1.000) | 29 (0.210) | 24/432 | 5.1 | 18.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 116 (0.850) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 150 (1.020) | 25 (0.180) | 24/432 | 5.1 | 16.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 122 (0.890) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 4295832 = | NA (NA) | 15 (0.120) | 4/386 | 11.7 | NA | intergenic (+38/+604) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296394 | NA (NA) | noncoding (560/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 4502104 | 204 (1.390) | 4 (0.030) | 4/442 | 12.8 | 2.0% | noncoding (1412/1426 nt) | IS4 | repeat region |
| ? | NC_000913 | = 4502108 | 199 (1.420) | noncoding (1408/1426 nt) | IS4 | repeat region | |||||
| * | ? | NC_000913 | = 4309625 | 157 (1.070) | 4 (0.030) | 4/448 | 12.9 | 2.5% | coding (1356/1533 nt) | alsA | D‑allose ABC transporter ATPase |
| ? | NC_000913 | = 4309649 | 164 (1.160) | coding (1332/1533 nt) | alsA | D‑allose ABC transporter ATPase | |||||
| * | ? | NC_000913 | = 3618253 | 142 (0.970) | 4 (0.030) | 4/448 | 12.9 | 2.7% | coding (478/807 nt) | nikE | nickel ABC transporter ATPase |
| ? | NC_000913 | = 3618266 | 147 (1.040) | coding (491/807 nt) | nikE | nickel ABC transporter ATPase | |||||
| * | ? | NC_000913 | 315401 = | NA (NA) | 3 (0.020) | 3/438 | 13.4 | NA | noncoding (173/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315627 = | NA (NA) | noncoding (399/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 2156894 = | 128 (0.870) | 3 (0.020) | 3/446 | 13.6 | 2.4% | coding (1632/3123 nt) | mdtB | multidrug efflux system, subunit B |
| ? | NC_000913 | 2156919 = | 120 (0.850) | coding (1657/3123 nt) | mdtB | multidrug efflux system, subunit B | |||||
| * | ? | NC_000913 | = 3781949 | 178 (1.210) | 3 (0.020) | 3/452 | 13.7 | 1.9% | coding (614/822 nt) | cysE | serine acetyltransferase |
| ? | NC_000913 | = 3782182 | 143 (1.000) | coding (381/822 nt) | cysE | serine acetyltransferase | |||||