mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 31.8% | 52.4 / 34.0 | 44 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 184,245 | 0 | A | T | 31.6% | 21.0 / 10.4 | 19 | intergenic (‑150/+12) | yaeH/yaeI | UPF0325 family protein/phosphodiesterase with model substrate bis‑pNPP |
| * | NC_000913 | 2,062,354 | 0 | T | A | 28.0% | 37.2 / 14.0 | 25 | intergenic (+19/+37) | asnV/ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| * | NC_000913 | 2,062,355 | 0 | T | G | 24.0% | 42.8 / 10.8 | 25 | intergenic (+20/+36) | asnV/ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| * | NC_000913 | 2,062,356 | 0 | C | A | 24.0% | 46.3 / 10.0 | 25 | intergenic (+21/+35) | asnV/ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| * | NC_000913 | 2,062,357 | 0 | T | A | 24.0% | 38.7 / 10.7 | 25 | intergenic (+22/+34) | asnV/ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| * | NC_000913 | 1,408,292 | 0 | T | A | 21.4% | 47.9 / 10.1 | 28 | R81R (CGT→CGA) | ydaN | putative Zn(II) transporter |
| * | NC_000913 | 1,988,048 | 0 | A | T | 21.1% | 75.4 / 17.1 | 38 | intergenic (‑89/‑174) | azuC/yecR | acid‑inducible small membrane‑associated protein/lipoprotein, function unknown |
| * | NC_000913 | 1,988,049 | 0 | C | T | 21.1% | 75.7 / 15.0 | 38 | intergenic (‑90/‑173) | azuC/yecR | acid‑inducible small membrane‑associated protein/lipoprotein, function unknown |
| * | NC_000913 | 1,988,050 | 0 | A | G | 21.1% | 71.0 / 16.1 | 38 | intergenic (‑91/‑172) | azuC/yecR | acid‑inducible small membrane‑associated protein/lipoprotein, function unknown |
| * | NC_000913 | 1,988,051 | 0 | A | T | 21.1% | 72.1 / 15.8 | 38 | intergenic (‑92/‑171) | azuC/yecR | acid‑inducible small membrane‑associated protein/lipoprotein, function unknown |
| * | NC_000913 | 2,028,158 | 0 | G | C | 20.0% | 57.0 / 10.5 | 25 | intergenic (‑141/+30) | yedQ/yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| * | NC_000913 | 2,028,160 | 0 | G | C | 20.0% | 59.0 / 10.5 | 25 | intergenic (‑143/+28) | yedQ/yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| * | NC_000913 | 3,483,242 | 0 | G | C | 20.0% | 84.6 / 14.1 | 35 | S14T (AGC→ACC) ‡ | yheT | UPF0017 family putative hydrolase |
| * | NC_000913 | 3,483,243 | 0 | C | T | 20.0% | 71.0 / 12.8 | 35 | S14S (AGC→AGT) ‡ | yheT | UPF0017 family putative hydrolase |
| * | NC_000913 | 3,483,244 | 0 | A | G | 20.0% | 69.0 / 12.2 | 35 | S15G (AGT→GGT) ‡ | yheT | UPF0017 family putative hydrolase |
| * | NC_000913 | 3,483,245 | 0 | G | C | 20.0% | 82.7 / 15.8 | 35 | S15T (AGT→ACT) ‡ | yheT | UPF0017 family putative hydrolase |
| Marginal new junction evidence (lowest skew 10 of 49 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1294158 = | 25 (0.730) | 6 (0.190) | 6/252 | 3.1 | 20.6% | intergenic (+14/+268) | tdk/insZ | thymidine kinase/deoxyuridine kinase/pseudogene, transposase homolog |
| ? | NC_000913 | 1294195 = | 23 (0.720) | intergenic (+51/+231) | tdk/insZ | thymidine kinase/deoxyuridine kinase/pseudogene, transposase homolog | |||||
| * | ? | NC_000913 | = 3685751 | 43 (1.260) | 6 (0.180) | 6/260 | 3.2 | 14.9% | coding (3423/3474 nt) | bcsC | cellulose synthase subunit |
| ? | NC_000913 | = 3685795 | 27 (0.820) | coding (3379/3474 nt) | bcsC | cellulose synthase subunit | |||||
| * | ? | NC_000913 | 2438217 = | 38 (1.110) | 6 (0.180) | 6/262 | 3.2 | 13.8% | coding (268/996 nt) | flk | putative flagella assembly protein |
| ? | NC_000913 | 2438254 = | 38 (1.150) | coding (305/996 nt) | flk | putative flagella assembly protein | |||||
| * | ? | NC_000913 | = 3083839 | 41 (1.200) | 5 (0.160) | 5/252 | 3.4 | 11.3% | intergenic (‑42/+96) | speB/speA | agmatinase/biosynthetic arginine decarboxylase, PLP‑binding |
| ? | NC_000913 | = 3083858 | 40 (1.260) | intergenic (‑61/+77) | speB/speA | agmatinase/biosynthetic arginine decarboxylase, PLP‑binding | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 5 (0.160) | 5/252 | 3.4 | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 4226590 = | 48 (1.410) | 5 (0.150) | 5/256 | 3.5 | 9.7% | coding (2763/3684 nt) | metH | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| ? | NC_000913 | 4226621 = | 48 (1.480) | coding (2794/3684 nt) | metH | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent | |||||
| * | ? | NC_000913 | = 4076176 | 27 (0.790) | 5 (0.160) | 5/254 | 3.5 | 14.8% | coding (31/873 nt) | yihY | BrkB family putative transporter, inner membrane protein |
| ? | NC_000913 | = 4076196 | 32 (1.000) | coding (51/873 nt) | yihY | BrkB family putative transporter, inner membrane protein | |||||
| * | ? | NC_000913 | 2578172 = | 37 (1.080) | 6 (0.180) | 5/258 | 3.5 | 15.7% | coding (206/2280 nt) | maeB | malic enzyme: putative oxidoreductase/phosphotransacetylase |
| ? | NC_000913 | 2578198 = | 29 (0.890) | coding (180/2280 nt) | maeB | malic enzyme: putative oxidoreductase/phosphotransacetylase | |||||
| * | ? | NC_000913 | 2296694 = | 40 (1.170) | 5 (0.150) | 5/260 | 3.5 | 11.4% | coding (331/663 nt) | ccmB | heme export ABC transporter permease |
| ? | NC_000913 | 2296724 = | 39 (1.190) | coding (301/663 nt) | ccmB | heme export ABC transporter permease | |||||
| * | ? | NC_000913 | 2779606 = | 45 (1.320) | 5 (0.150) | 5/264 | 3.6 | 10.5% | coding (3121/4581 nt) | ypjA | adhesin‑like autotransporter |
| ? | NC_000913 | 2779643 = | 41 (1.230) | coding (3084/4581 nt) | ypjA | adhesin‑like autotransporter | |||||