breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
RA	44,301	(T)9→8	intergenic (+132/‑359)	oprD_1 → / → czcR_2	Porin D/Transcriptional activator protein CzcR
RA	120,983	(T)9→8	intergenic (+280/+92)	polA → / ← engB	DNA polymerase I/putative GTP‑binding protein EngB
RA	179,484	T→C	C316R (TGC→CGC)	CJ019_00182 →	hypothetical protein
RA	690,144	A→G	intergenic (+21/‑2438)	bauC → / → PP_RS08750	Putative 3‑oxopropanoate dehydrogenase/tRNA‑Val
RA	690,150	T→G	intergenic (+27/‑2432)	bauC → / → PP_RS08750	Putative 3‑oxopropanoate dehydrogenase/tRNA‑Val
RA	2,242,308	G→T	S116R (AGC→AGA)	CJ019_02129 ←	hypothetical protein
RA	3,065,508	G→A	V53M (GTG→ATG)	rcsC_6 →	Sensor histidine kinase RcsC
JC	4,257,352	+GCGGCCGC	intergenic (‑281/+7)	CJ019_03991 ← / ← CJ019_03994	putative ABC transporter ATP‑binding protein/hypothetical protein
RA	4,612,646	(A)10→11	intergenic (+1098/‑681)	CJ019_04358 → / → rhsC	hypothetical protein/Putative deoxyribonuclease RhsC
RA	4,760,690	G→C	A24P (GCA→CCA)	vanB →	vanillate O‑demethylase oxidoreductase
RA	5,756,060	(A)6→5	coding (781/834 nt)	CJ019_05400 →	hypothetical protein

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	ACB122	87965	88066	102	22 [21]	[21] 22	[CJ019_00094]–[CJ019_00095]	[CJ019_00094],[CJ019_00095]
*	*	÷	ACB122	277590	277697	108	22 [19]	[20] 22	[betT2]–[tauD_2]	[betT2],[tauD_2]
*	*	÷	ACB122	517190	517327	138	29 [17]	[20] 23	tyrS/birA	Tyrosine‑‑tRNA ligase/Bifunctional ligase/repressor BirA
*	*	÷	ACB122	674282	674384	103	22 [19]	[19] 22	[nimR_1]–[mcpH_2]	[nimR_1],[mcpH_2]
*	*	÷	ACB122	1524782	1524953	172	25 [21]	[17] 29	[CJ019_01439]	[CJ019_01439]
*	*	÷	ACB122	1585606	1585716	111	22 [21]	[21] 22	CJ019_01493	hypothetical protein
*	*	÷	ACB122	1705098	1705220	123	22 [19]	[21] 22	ppc/adk	Phosphoenolpyruvate carboxylase/Adenylate kinase
*	*	÷	ACB122	1923400	1923538	139	22 [21]	[20] 22	[apeB]	[apeB]
*	*	÷	ACB122	2288855	2288932	78	22 [21]	[21] 22	CJ019_02171/CJ019_02172	hypothetical protein/hypothetical protein
*	*	÷	ACB122	2467207	2467225	19	36 [0]	[15] 36	CJ019_02325/tal	hypothetical protein/Transaldolase
*	*	÷	ACB122	3769378	3769497	120	25 [21]	[21] 25	CJ019_03581/CJ019_03582	hypothetical protein/hypothetical protein
*	*	÷	ACB122	4163777	4163879	103	24 [21]	[21] 22	katG/leuO_2	Catalase‑peroxidase/HTH‑type transcriptional regulator LeuO
*	*	÷	ACB122	4344766	4344835	70	22 [21]	[20] 26	nmoA	Nitronate monooxygenase
*	*	÷	ACB122	4732426	4732509	84	22 [19]	[19] 22	[CJ019_04468]	[CJ019_04468]
*	*	÷	ACB122	4846364	4846485	122	22 [21]	[20] 23	recR/ybaB	Recombination protein RecR/Nucleoid‑associated protein YbaB
*	*	÷	ACB122	4944854	4944992	139	22 [21]	[19] 22	[CJ019_04642]	[CJ019_04642]
*	*	÷	ACB122	5193572	5193701	130	22 [21]	[20] 22	[gltR_4]–[CJ019_04888]	[gltR_4],[CJ019_04888]
*	*	÷	ACB122	5499061	5499298	238	22 [19]	[21] 28	[CJ019_05176]	[CJ019_05176]
*	*	÷	ACB122	5529661	5529757	97	27 [18]	[16] 24	[nadE]	[nadE]
*	*	÷	ACB122	5550445	5550609	165	22 [20]	[21] 27	CJ019_05227/purA	hypothetical protein/Adenylosuccinate synthetase
*	*	÷	ACB122	5895759	5895861	103	24 [19]	[21] 24	[CJ019_05521]	[CJ019_05521]