Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
1 3 5
2 2 4
3 2 4
4 2 4
5 2 4
6 2 4
6 13 25

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 23 66
Multiple Base Substitutions 1 6
Deletions 4 10
Insertions 0 0
Mobile Element Insertions 0 0
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 28 82

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F0 I1 R1 2 0 129.5 3943034 98.6% 3887831 136.7
A1 F20 I0 R1 81 0 321.7 9967800 98.5% 9818283 136.7
A1 F40 I0 R1 92 0 201.8 6226314 98.3% 6120466 136.8
A1 F40 I1 R1 7 0 218.7 6794176 98.5% 6692263 135.3
A1 F40 I2 R1 6 0 223.7 6883394 98.5% 6780143 135.8
A2 F20 I0 R1 71 0 280.3 8675630 98.3% 8528144 136.6
A2 F40 I0 R1 226 0 157.9 4869008 98.2% 4781365 136.5
A2 F40 I1 R1 6 0 275.9 8527684 98.7% 8416824 135.3
A2 F40 I2 R1 5 0 200.6 6166344 98.5% 6073848 135.5
A3 F20 I0 R1 87 0 336.6 10394858 98.4% 10228540 136.6
A3 F40 I0 R1 76 0 276.7 8533478 98.2% 8379875 136.7
A3 F40 I1 R1 5 0 137.2 4177036 98.6% 4118557 136.2
A3 F40 I2 R1 6 0 186.9 5698930 98.6% 5619144 136.1
A4 F20 I0 R1 145 0 475.9 15539168 95.3% 14808827 136.4
A4 F40 I0 R1 58 0 251.0 7744538 98.4% 7620625 136.6
A4 F40 I1 R1 4 0 307.0 9421140 98.8% 9308086 135.5
A4 F40 I2 R1 4 0 176.9 5427430 98.5% 5346018 135.5
A5 F20 I0 R1 115 0 486.4 15388522 98.6% 15173082 136.7
A5 F40 I0 R1 80 0 337.3 10482018 98.3% 10303823 136.5
A5 F40 I1 R1 4 0 251.4 7738804 98.4% 7614983 135.8
A5 F40 I2 R1 3 0 188.4 5759492 98.4% 5667340 136.2
A6 F20 I0 R1 58 0 260.5 8057766 98.4% 7928841 136.8
A6 F40 I0 R1 100 0 374.6 11608236 98.6% 11445720 136.7
A6 F40 I1 R1 4 0 163.5 5032272 98.3% 4946723 135.9
A6 F40 I2 R1 6 0 137.3 4211472 98.5% 4148299 135.7

Mutation Needle Plot

Mutation Targets

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