mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 196,535 | C→G | 7.1% | S99* (TCA→TGA) | cdaA → | diadenylate cyclase CdaA |
| RA | 240,174 | T→G | 8.3% | N120H (AAC→CAC) | EO946_RS01360 ← | hypothetical protein |
| RA | 240,207 | G→T | 9.0% | Q109K (CAA→AAA) | EO946_RS01360 ← | hypothetical protein |
| RA | 485,053 | G→T | 8.8% | L445F (TTG→TTT) | kimA → | potassium transporter KimA |
| RA | 607,359 | A→C | 13.9% | T68P (ACC→CCC) | EO946_RS03185 → | collagen‑like protein |
| RA | 607,413 | A→C | 15.7% | T86P (ACC→CCC) | EO946_RS03185 → | collagen‑like protein |
| RA | 607,592 | A→C | 5.9% | E145D (GAA→GAC) | EO946_RS03185 → | collagen‑like protein |
| RA | 607,638 | G→C | 9.3% | A161P (GCC→CCC) | EO946_RS03185 → | collagen‑like protein |
| RA | 607,700 | A→C | 30.5% | E181D (GAA→GAC) | EO946_RS03185 → | collagen‑like protein |
| RA | 607,702 | C→T | 19.6% | A182V (GCC→GTC) | EO946_RS03185 → | collagen‑like protein |
| RA | 607,838 | A→G | 14.1% | T227T (ACA→ACG) | EO946_RS03185 → | collagen‑like protein |
| RA | 634,078 | C→G | 9.4% | E565Q (GAA→CAA) | EO946_RS03330 ← | ABC‑F family ATP‑binding cassette domain‑containing protein |
| RA | 814,356 | T→G | 16.6% | H340Q (CAT→CAG) | nosA → | nitric oxide synthase |
| RA | 1,097,399 | C→A | 5.4% | Q48K (CAA→AAA) | EO946_RS05675 → | MarR family transcriptional regulator |
| RA | 1,152,044 | G→T | 8.1% | D53E (GAC→GAA) | EO946_RS05920 ← | GNAT family N‑acetyltransferase |
| RA | 1,366,028 | A→C | 9.9% | T176P (ACG→CCG) | EO946_RS07135 → | PepSY domain‑containing protein |
| RA | 1,514,854 | T→G | 10.9% | intergenic (+58/+1) | EO946_RS07915 → / ← EO946_RS07920 | YlaH‑like family protein/YlaI family protein |
| RA | 1,743,439 | G→T | 5.7% | L167L (CTG→CTT) | cotE → | outer spore coat protein CotE |
| RA | 1,753,598 | G→T | 13.6% | intergenic (+289/‑216) | fabD → / → EO946_RS09090 | ACP S‑malonyltransferase/acyltransferase domain‑containing protein |
| RA | 1,805,539 | G→A | 6.2% | T773T (ACG→ACA) | EO946_RS09140 → | non‑ribosomal peptide synthetase |
| RA | 1,805,557 | C→T | 5.7% | V779V (GTC→GTT) | EO946_RS09140 → | non‑ribosomal peptide synthetase |
| RA | 1,805,565 | T→C | 6.1% | M782T (ATG→ACG) | EO946_RS09140 → | non‑ribosomal peptide synthetase |
| RA | 1,805,596 | A→G | 6.0% | K792K (AAA→AAG) | EO946_RS09140 → | non‑ribosomal peptide synthetase |
| RA | 1,805,602 | G→C | 6.5% | V794V (GTG→GTC) | EO946_RS09140 → | non‑ribosomal peptide synthetase |
| RA | 1,805,603 | T→C | 6.1% | S795P (TCG→CCG) | EO946_RS09140 → | non‑ribosomal peptide synthetase |
| RA | 2,034,593 | C→A | 17.4% | intergenic (‑259/‑135) | EO946_RS10175 ← / → EO946_RS10180 | UPF0715 family protein/hypothetical protein |
| RA | 2,139,480 | A→C | 9.3% | A119A (GCT→GCG) | deoD ← | purine‑nucleoside phosphorylase |
| RA | 2,214,555 | C→A | 5.9% | V48L (GTA→TTA) | nth ← | endonuclease III |
| RA | 2,502,242 | T→G | 19.9% | T274P (ACG→CCG) | hrcA ← | heat‑inducible transcriptional repressor HrcA |
| RA | 2,502,244 | T→G | 11.5% | H273P (CAC→CCC) | hrcA ← | heat‑inducible transcriptional repressor HrcA |
| RA | 2,729,917 | C→A | 10.3% | K283N (AAG→AAT) | lcfA ← | long‑chain‑fatty‑acid‑‑CoA ligase LcfA |
| RA | 2,864,573 | T→G | 5.2% | T415T (ACA→ACC) | pulA ← | type I pullulanase |
| RA | 2,982,236 | T→C | 41.7% | noncoding (284/1550 nt) | EO946_RS15435 ← | 16S ribosomal RNA |
| RA | 2,991,245 | G→T | 29.7% | intergenic (+46/‑161) | gbsR → / → bslA | transcriptional regulator GbsR/biofilm‑surface layer protein BslA |
| RA | 2,991,252 | C→A | 36.7% | intergenic (+53/‑154) | gbsR → / → bslA | transcriptional regulator GbsR/biofilm‑surface layer protein BslA |
| RA | 3,219,792 | C→G | 11.8% | P377R (CCG→CGG) | oxdC → | oxalate decarboxylase |
| RA | 3,247,065 | C→T | 100% | intergenic (‑11/+110) | bdbD ← / ← cadA | disulfide bond formation protein BdbD/cadmium‑translocating P‑type ATPase |
| RA | 3,285,567 | C→T | 32.0% | L278L (CTG→CTA) | EO946_RS16995 ← | IS3 family transposase |
| RA | 3,285,575 | T→G | 32.1% | N276H (AAT→CAT) | EO946_RS16995 ← | IS3 family transposase |
| RA | 3,285,580 | A→G | 34.7% | I274T (ATA→ACA) | EO946_RS16995 ← | IS3 family transposase |
| RA | 3,285,647 | C→A | 36.6% | V252L (GTA→TTA) | EO946_RS16995 ← | IS3 family transposase |
| RA | 3,285,713 | G→A | 28.5% | L230L (CTA→TTA) | EO946_RS16995 ← | IS3 family transposase |
| RA | 3,294,907 | T→A | 6.0% | D288V (GAT→GTT) | eno ← | phosphopyruvate hydratase |
| RA | 3,349,666 | T→G | 6.6% | intergenic (+1/+26) | EO946_RS17305 → / ← padC | hypothetical protein/phenolic acid decarboxylase |
| RA | 3,446,995 | C→A | 9.1% | V197V (GTG→GTT) | degU ← | two‑component system response regulator DegU |
| RA | 3,447,038 | T→G | 12.8% | N183T (AAC→ACC) | degU ← | two‑component system response regulator DegU |
| RA | 3,539,589 | T→G | 7.5% | I122L (ATC→CTC) | EO946_RS18215 ← | T7SS effector LXG polymorphic toxin |
| RA | 3,719,864 | T→G | 5.6% | S79R (AGC→CGC) | EO946_RS19145 ← | YwdI family protein |
| RA | 3,851,269 | G→C | 9.3% | R36G (CGT→GGT) | EO946_RS19820 ← | hypothetical protein |
| RA | 3,906,067 | A→C | 12.4% | I42S (ATT→AGT) | EO946_RS20100 ← | DUF3255 family protein |
| RA | 3,976,142 | C→A | 5.4% | E22* (GAA→TAA) | rlmH ← | 23S rRNA (pseudouridine(1915)‑N(3))‑methyltransferase RlmH |
| RA | 3,996,857 | C→A | 8.6% | intergenic (‑163/+43) | purA ← / ← EO946_RS20530 | adenylosuccinate synthase/VOC family protein |
| RA | 3,996,927 | C→A | 6.6% | M131I (ATG→ATT) | EO946_RS20530 ← | VOC family protein |
| RA | 4,000,117 | G→T | 7.5% | L121F (TTG→TTT) | EO946_RS20555 → | MFS transporter |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | = 91969 | NA (NA) | 8 (0.030) | 4/250 | NT | NA | intergenic (+131/‑39) | EO946_RS00485/EO946_RS00490 | 16S ribosomal RNA/23S ribosomal RNA |
| ? | NZ_CP034943 | 91973 = | NA (NA) | intergenic (+135/‑35) | EO946_RS00485/EO946_RS00490 | 16S ribosomal RNA/23S ribosomal RNA | |||||
| * | ? | NZ_CP034943 | 607695 = | 116 (0.480) | 24 (0.110) +AGTAGCCCCT |
13/232 | NT | 11.0% | coding (538/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | = 607846 | 306 (1.260) | coding (689/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||