mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | = 3376760 | 644 (1.420) | 8 (0.020) | 3/250 | NT | 1.3% | intergenic (‑125/+94) | trxB/cwlO | thioredoxin‑disulfide reductase/peptidoglycan DL‑endopeptidase CwlO |
| ? | NZ_CP034943 | 3376771 = | 607 (1.340) | intergenic (‑136/+83) | trxB/cwlO | thioredoxin‑disulfide reductase/peptidoglycan DL‑endopeptidase CwlO | |||||
| * | ? | NZ_CP034943 | = 2940996 | 384 (0.850) | 3 (0.010) | 3/248 | NT | 0.78% | coding (83/441 nt) | EO946_RS15155 | FixH family protein |
| ? | NZ_CP034943 | 2941000 = | 384 (0.860) | coding (79/441 nt) | EO946_RS15155 | FixH family protein | |||||
| * | ? | NZ_CP034943 | = 2766994 | 252 (0.590) | 4 (0.010) +33 bp |
4/170 | NT | 1.9% | coding (60/660 nt) | EO946_RS14310 | hypothetical protein |
| ? | NZ_CP034943 | 2767028 = | 283 (0.630) | coding (94/660 nt) | EO946_RS14310 | hypothetical protein | |||||
| * | ? | NZ_CP034943 | 2220949 = | 195 (0.430) | 3 (0.010) | 3/230 | NT | 1.7% | coding (799/2796 nt) | dinG | ATP‑dependent DNA helicase DinG |
| ? | NZ_CP034943 | = 2220945 | 176 (0.420) | coding (803/2796 nt) | dinG | ATP‑dependent DNA helicase DinG | |||||
| * | ? | NZ_CP034943 | = 1536008 | 449 (1.000) | 5 (0.010) +AATAA |
3/238 | NT | 1.1% | intergenic (+282/‑38) | EO946_RS08025/rsmD | YlbG family protein/16S rRNA (guanine(966)‑N(2))‑methyltransferase RsmD |
| ? | NZ_CP034943 | 1536009 = | 450 (1.000) | intergenic (+283/‑37) | EO946_RS08025/rsmD | YlbG family protein/16S rRNA (guanine(966)‑N(2))‑methyltransferase RsmD | |||||
| * | ? | NZ_CP034943 | 908850 = | 347 (0.770) | 3 (0.010) | 3/242 | NT | 0.88% | coding (151/258 nt) | sspE | gamma type acid‑soluble spore protein SspE |
| ? | NZ_CP034943 | = 908846 | 340 (0.780) | coding (147/258 nt) | sspE | gamma type acid‑soluble spore protein SspE | |||||
| * | ? | NZ_CP034943 | 767776 = | 453 (1.000) | 3 (0.010) | 3/224 | NT | 0.73% | coding (189/645 nt) | EO946_RS03930 | hypothetical protein |
| ? | NZ_CP034943 | = 767772 | 414 (1.020) | coding (193/645 nt) | EO946_RS03930 | hypothetical protein | |||||
| * | ? | NZ_CP034943 | = 607537 | 293 (0.650) | 3 (0.010) | 3/240 | NT | 0.70% | coding (380/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607799 = | 571 (1.320) | coding (642/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | = 607213 | 586 (1.300) | 10 (0.020) | 5/246 | NT | 1.8% | coding (56/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607844 = | 496 (1.120) | coding (687/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | = 607210 | 594 (1.310) | 15 (0.030) | 5/246 | NT | 3.4% | coding (53/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607526 = | 279 (0.630) | coding (369/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||