mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 61 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2780408 | 96 (1.080) | 2 (0.020) | 3/246 | NT | 2.1% | coding (325/1437 nt) | arcD3 | APC family amino acid‑polyamine‑organocation transporter |
| ? | CP000730 | = 2780412 | 94 (1.110) | coding (321/1437 nt) | arcD3 | APC family amino acid‑polyamine‑organocation transporter | |||||
| * | ? | CP000730 | 2757647 = | 106 (1.200) | 4 (0.050) | 4/246 | NT | 3.8% | coding (1735/1851 nt) | nrdD | anaerobic ribonucleotide reductase large subunit |
| ? | CP000730 | 2757704 = | 101 (1.200) | coding (1678/1851 nt) | nrdD | anaerobic ribonucleotide reductase large subunit | |||||
| * | ? | CP000730 | = 2676550 | 84 (0.960) | 4 (0.050) +TTAG |
4/248 | NT | 4.7% | intergenic (‑22/+25) | ilvB2/cidB | pyruvate oxidase/hypothetical membrane protein |
| ? | CP000730 | 2676551 = | 84 (0.950) | intergenic (‑23/+24) | ilvB2/cidB | pyruvate oxidase/hypothetical membrane protein | |||||
| * | ? | CP000730 | = 2636366 | 65 (0.730) | 3 (0.040) | 3/236 | NT | 4.5% | intergenic (‑419/+50) | fnbA/gntP | fibronectin‑binding protein A/GntP family gluconate:proton (H+) symporter |
| ? | CP000730 | = 2636392 | 69 (0.850) | intergenic (‑445/+24) | fnbA/gntP | fibronectin‑binding protein A/GntP family gluconate:proton (H+) symporter | |||||
| * | ? | CP000730 | 2636356 = | 70 (0.790) | 3 (0.040) | 3/236 | NT | 4.3% | intergenic (‑409/+60) | fnbA/gntP | fibronectin‑binding protein A/GntP family gluconate:proton (H+) symporter |
| ? | CP000730 | 2636404 = | 69 (0.850) | intergenic (‑457/+12) | fnbA/gntP | fibronectin‑binding protein A/GntP family gluconate:proton (H+) symporter | |||||
| * | ? | CP000730 | 2628271 = | 86 (0.970) | 4 (0.050) | 4/242 | NT | 4.8% | intergenic (+141/+70) | sarU/galU | staphylococcal accessory regulator U/UTP‑‑glucose‑1‑phosphate uridylyltransferase |
| ? | CP000730 | 2628335 = | 79 (0.950) | intergenic (+205/+6) | sarU/galU | staphylococcal accessory regulator U/UTP‑‑glucose‑1‑phosphate uridylyltransferase | |||||
| * | ? | CP000730 | 2609395 = | 83 (0.940) | 3 (0.040) | 3/234 | NT | 4.0% | intergenic (‑225/‑210) | USA300HOU_2471/USA300HOU_2472 | hypothetical protein/hypothetical protein |
| ? | CP000730 | 2609451 = | 68 (0.850) | intergenic (‑281/‑154) | USA300HOU_2471/USA300HOU_2472 | hypothetical protein/hypothetical protein | |||||
| * | ? | CP000730 | 2567817 = | 82 (0.930) | 3 (0.040) | 3/244 | NT | 3.9% | coding (104/1830 nt) | ydaO | APC family amino acid‑polyamine‑organocation transporter |
| ? | CP000730 | 2567861 = | 72 (0.860) | coding (60/1830 nt) | ydaO | APC family amino acid‑polyamine‑organocation transporter | |||||
| * | ? | CP000730 | 2519257 = | 106 (1.200) | 3 (0.040) | 3/246 | NT | 2.9% | coding (1375/3690 nt) | narG | nitrate reductase alpha subunit |
| ? | CP000730 | 2519287 = | 98 (1.160) | coding (1345/3690 nt) | narG | nitrate reductase alpha subunit | |||||
| * | ? | CP000730 | = 2419233 | 89 (1.000) | 3 (0.040) | 3/240 | NT | 3.5% | intergenic (‑71/‑177) | odh/USA300HOU_2284 | D‑octopine dehydrogenase/hypothetical membrane protein |
| ? | CP000730 | = 2419242 | 83 (1.010) | intergenic (‑80/‑168) | odh/USA300HOU_2284 | D‑octopine dehydrogenase/hypothetical membrane protein | |||||