mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.26.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 2,988,006 | 0 | C→A | 1.9% | 4.4 ‑0.7 ‑0.0 | 304 | F157L (TTC→TTA) | yqeH | putative LuxR family transcriptional regulator |
| * | NC_000913 | 3,190,247 | 0 | A→. | 1.2% | 3.0 0.0 ‑0.0 | 324 | coding (367/750 nt) | yqiH | putative periplasmic pilin chaperone |
| * | NC_000913 | 2,726,660 | 0 | C→T | 100.0% | 2.4 | 3 | noncoding (2525/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| * | NC_000913 | 382,314 | 0 | T→G | 100.0% | 2.1 | 2 | M214R (ATG→AGG) | insD1 | IS2 transposase TnpB |
| * | NC_000913 | 2,197,443 | 1 | .→A | 1.0% | 2.1 0.0 ‑0.6 | 198 | pseudogene (970/2847 nt) | yehH | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
| * | NC_000913 | 142,098 | 1 | .→A | 1.0% | 2.0 0.0 ‑0.4 | 197 | coding (573/663 nt) | can | carbonic anhydrase |
| * | NC_000913 | 2,787,648 | 1 | .→A | 0.8% | 1.7 0.0 ‑0.2 | 249 | pseudogene (1252/2253 nt) | ygaQ | uncharacterized protein; putative enzyme |
| * | NC_000913 | 3,532,515 | 1 | .→C | 1.0% | 1.7 0.0 ‑0.2 | 203 | intergenic (‑76/‑303) | yhgE/pck | DUF4153 family putative inner membrane protein/phosphoenolpyruvate carboxykinase [ATP] |
| * | NC_000913 | 3,290,946 | 1 | .→C | 1.0% | 1.6 0.0 ‑0.8 | 203 | coding (2133/2517 nt) | yraJ | putative outer membrane protein |
| * | NC_000913 | 1,078,228 | 1 | .→T | 1.0% | 1.5 0.0 ‑0.4 | 206 | coding (655/3963 nt) | putA | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| * | NC_000913 | 1,300,613 | 0 | G→T | 100.0% | 1.3 | 1 | intergenic (+1368/‑569) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 2,987,772 | 1 | .→T | 0.5% | 1.3 0.0 ‑0.3 | 380 | coding (237/633 nt) | yqeH | putative LuxR family transcriptional regulator |
| * | NC_000913 | 3,425,137 | 0 | A→C | 100.0% | 1.3 | 1 | noncoding (1647/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 1,300,643 | 0 | T→G | 100.0% | 1.2 | 1 | intergenic (+1398/‑539) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 3,426,552 | 0 | C→T | 100.0% | 1.2 | 1 | noncoding (232/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 1,125,694 | 1 | .→G | 0.9% | 1.0 0.0 ‑0.1 | 212 | coding (133/585 nt) | rimJ | ribosomal‑protein‑S5‑alanine N‑acetyltransferase |
| * | NC_000913 | 1,300,686 | 0 | C→A | 100.0% | 1.0 | 1 | intergenic (+1441/‑496) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 1,528,882 | 0 | G→A | 100.0% | 1.0 | 2 | pseudogene (981/2037 nt) | rhsE | pseudogene, Rhs family |
| * | NC_000913 | 3,619,565 | 0 | A→C | 100.0% | 1.0 | 1 | H125P (CAC→CCC) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 1,410,123 | 1 | .→T | 1.0% | 0.9 0.0 ‑0.1 | 200 | coding (613/1374 nt) | dbpA | ATP‑dependent RNA helicase, specific for 23S rRNA |
| * | NC_000913 | 2,782,945 | 0 | A→. | 1.2% | 0.9 0.0 ‑0.1 | 255 | intergenic (‑219/+120) | ypjA/pinH | adhesin‑like autotransporter/pseudogene, invertase resolvase family |
| * | NC_000913 | 1,064,777 | 0 | A→. | 1.2% | 0.8 0.0 ‑0.0 | 240 | coding (742/1257 nt) | yccE | uncharacterized protein |
| * | NC_000913 | 3,425,142 | 0 | C→T | 100.0% | 0.8 | 1 | noncoding (1642/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 4,073,335 | 1 | .→T | 1.0% | 0.8 0.0 ‑0.1 | 201 | coding (237/897 nt) | yihU | 3‑sulpholactaldehyde (SLA) reductase, NADH‑dependent; gamma‑hydroxybutyrate dehydrogenase, NADH‑dependent |
| * | NC_000913 | 4,221,330 | 1 | .→A | 0.8% | 0.8 0.0 ‑0.0 | 261 | coding (1158/2187 nt) | arpA | ankyrin repeat protein |
| * | NC_000913 | 4,577,266 | 1 | .→G | 0.7% | 0.8 0.0 ‑0.3 | 285 | coding (693/1047 nt) | mcrC | 5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrC |
| * | NC_000913 | 431,893 | 1 | .→G | 1.0% | 0.7 0.0 ‑0.1 | 201 | coding (121/885 nt) | tsx | nucleoside channel, receptor of phage T6 and colicin K |
| * | NC_000913 | 1,300,657 | 0 | C→G | 100.0% | 0.7 | 1 | intergenic (+1412/‑525) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 3,190,114 | 1 | .→C | 0.8% | 0.7 0.0 ‑0.1 | 246 | coding (234/750 nt) | yqiH | putative periplasmic pilin chaperone |
| * | NC_000913 | 3,425,090 | 0 | G→T | 100.0% | 0.7 | 1 | noncoding (1694/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,425,122 | 0 | A→C | 100.0% | 0.7 | 1 | noncoding (1662/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,425,155 | 0 | A→G | 100.0% | 0.7 | 1 | noncoding (1629/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 15,667 | 0 | G→T | 100.0% | 0.6 | 1 | V75L (GTG→TTG) | insL1 | IS186 transposase |
| * | NC_000913 | 15,669 | 0 | G→T | 100.0% | 0.6 | 1 | V75V (GTG→GTT) | insL1 | IS186 transposase |
| * | NC_000913 | 688,138 | 0 | G→T | 100.0% | 0.6 | 1 | R292R (CGC→CGA) | insH1 | IS5 transposase and trans‑activator |
| * | NC_000913 | 1,300,548 | 0 | A→C | 100.0% | 0.6 | 1 | intergenic (+1303/‑634) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 2,289,201 | 0 | A→T | 100.0% | 0.6 | 4 | I294N (ATC→AAC) | insH1 | IS5 transposase and trans‑activator |
| * | NC_000913 | 2,289,824 | 0 | A→C | 100.0% | 0.6 | 1 | D86E (GAT→GAG) | insH1 | IS5 transposase and trans‑activator |
| * | NC_000913 | 2,726,902 | 0 | G→T | 100.0% | 0.6 | 3 | noncoding (2283/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| * | NC_000913 | 1,712,832 | 1 | .→C | 1.0% | 0.1 0.0 ‑0.0 | 206 | coding (64/1503 nt) | dtpA | dipeptide and tripeptide permease A |
| * | NC_000913 | 3,974,150 | 1 | .→G | 1.0% | 0.0 0.0 ‑0.0 | 199 | coding (543/882 nt) | rffH | glucose‑1‑phosphate thymidylyltransferase |